Class information for:
Level 1: MOTIF DISCOVERY//CLOSEST STRING PROBLEM//MOTIF FINDING

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
2302 2220 37.7 79%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
238 19563 BIOINFORMATICS//BMC BIOINFORMATICS//GENOME RESEARCH

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 MOTIF DISCOVERY Author keyword 30 42% 2% 55
2 CLOSEST STRING PROBLEM Author keyword 18 83% 0% 10
3 MOTIF FINDING Author keyword 14 47% 1% 22
4 TRANSCRIPTION FACTOR BINDING SITES Author keyword 14 31% 2% 37
5 UKG Address 12 75% 0% 9
6 BIOINFORMAT GENOMES EAUX BIGRE Address 10 52% 1% 14
7 TRANSCRIPTION FACTOR BINDING SITE Author keyword 10 27% 1% 32
8 POSITION WEIGHT MATRIX Author keyword 9 47% 1% 14
9 CLOSEST SUBSTRING Author keyword 6 80% 0% 4
10 BIOINFORMAT INTELLIGENT COMP Address 6 71% 0% 5

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 MOTIF DISCOVERY 30 42% 2% 55 Search MOTIF+DISCOVERY Search MOTIF+DISCOVERY
2 CLOSEST STRING PROBLEM 18 83% 0% 10 Search CLOSEST+STRING+PROBLEM Search CLOSEST+STRING+PROBLEM
3 MOTIF FINDING 14 47% 1% 22 Search MOTIF+FINDING Search MOTIF+FINDING
4 TRANSCRIPTION FACTOR BINDING SITES 14 31% 2% 37 Search TRANSCRIPTION+FACTOR+BINDING+SITES Search TRANSCRIPTION+FACTOR+BINDING+SITES
5 TRANSCRIPTION FACTOR BINDING SITE 10 27% 1% 32 Search TRANSCRIPTION+FACTOR+BINDING+SITE Search TRANSCRIPTION+FACTOR+BINDING+SITE
6 POSITION WEIGHT MATRIX 9 47% 1% 14 Search POSITION+WEIGHT+MATRIX Search POSITION+WEIGHT+MATRIX
7 CLOSEST SUBSTRING 6 80% 0% 4 Search CLOSEST+SUBSTRING Search CLOSEST+SUBSTRING
8 PROMOTER PREDICTION 5 33% 1% 12 Search PROMOTER+PREDICTION Search PROMOTER+PREDICTION
9 DE NOVO MOTIF DISCOVERY 4 75% 0% 3 Search DE+NOVO+MOTIF+DISCOVERY Search DE+NOVO+MOTIF+DISCOVERY
10 IRREDUNDANT MOTIF 4 75% 0% 3 Search IRREDUNDANT+MOTIF Search IRREDUNDANT+MOTIF

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 FACTOR BINDING SITES 163 33% 19% 414
2 COREGULATED GENES 45 68% 2% 39
3 CIS REGULATORY MODULES 40 50% 3% 58
4 UNALIGNED DNA FRAGMENTS 38 93% 1% 14
5 COMPUTATIONAL DETECTION 34 93% 1% 13
6 MOTIF DISCOVERY 26 41% 2% 49
7 STATISTICAL OVERREPRESENTATION 23 86% 1% 12
8 EXPECTATION MAXIMIZATION 20 31% 2% 54
9 FINDING MOTIFS 20 67% 1% 18
10 NONCODING SEQUENCES 16 22% 3% 63

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Determining the specificity of protein-DNA interactions 2010 92 55 60%
Applied bioinformatics for the identification of regulatory elements 2004 533 80 53%
Absence of a simple code: how transcription factors read the genome 2014 17 234 26%
Eukaryotic transcription factor binding sites - modeling and integrative search methods 2008 54 67 78%
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes 2005 143 78 63%
A survey of motif discovery methods in an integrated framework 2006 55 83 89%
Generic eukaryotic core promoter prediction using structural features of DNA 2008 90 97 39%
Computational identification of transcriptional regulatory elements in DNA sequence 2006 61 154 71%
COMPUTATIONAL STRATEGIES FOR THE GENOME-WIDE IDENTIFICATION OF CIS-REGULATORY ELEMENTS AND TRANSCRIPTIONAL TARGETS 2012 8 124 61%
A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data 2014 2 70 59%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 UKG 12 75% 0.4% 9
2 BIOINFORMAT GENOMES EAUX BIGRE 10 52% 0.6% 14
3 BIOINFORMAT INTELLIGENT COMP 6 71% 0.2% 5
4 THEORET GENET 6 47% 0.4% 9
5 HARVARD MIT HLTH SCI TECHNOL HST 4 42% 0.4% 8
6 ARCO GRP 4 50% 0.3% 6
7 GRP ALGORISM GENET 3 100% 0.1% 3
8 KNOWLEDGE EXTRACT 3 40% 0.3% 6
9 GENOM FUNCT ANAL SECT 3 60% 0.1% 3
10 LBNC 2 67% 0.1% 2

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000198284 PROGRAM COMPUTAT GENOM//CIFN//PROGRAMA GENOM COMPUTAC
2 0.0000171496 CHIP SEQ//PEAK CALLING//DNASE SEQ
3 0.0000148554 IROQUOIS//CONSERVED NONCODING ELEMENTS//ENERGY ENVIRONM BIOL COMP
4 0.0000117816 INTERACTION PROPENSITY//RNA BINDING RESIDUES//COMPUTAT INTELLIGENCE LEARNING DISCOVERY
5 0.0000095897 NETWORK INFERENCE//GENE REGULATORY NETWORKS//GENE NETWORK INFERENCE
6 0.0000091487 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
7 0.0000080249 CIS MOTIF//ARABIDOPSIS T87 CELL LINE//GENE ATLAS
8 0.0000069672 MULTIPLE SEQUENCE ALIGNMENT//T COFFEE//STATISTICAL ALIGNMENT
9 0.0000063057 NUCLEOSOME POSITIONING//NUCLEOSOME//NUCLEOSOME MAPPING
10 0.0000056257 EMBL OUTSTN//PROT INFORMAT OURCE//HLTH SCI TECHNOL ICIR