Class information for:
Level 1: PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
436 3404 37.0 78%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
42 31225 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//PROTEIN FOLDING

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 PROTEIN STRUCTURE PREDICTION Author keyword 96 30% 8% 267
2 FOLD RECOGNITION Author keyword 85 51% 4% 120
3 CASP Author keyword 74 60% 2% 81
4 PROTEIN STRUCTURE ALIGNMENT Author keyword 42 72% 1% 33
5 CAFASP Author keyword 37 100% 0% 14
6 PROTEIN STRUCTURE COMPARISON Author keyword 35 56% 1% 43
7 THREADING Author keyword 33 34% 2% 80
8 LIVEBENCH Author keyword 30 100% 0% 12
9 STRUCTURE ALIGNMENT Author keyword 24 52% 1% 32
10 PROTEIN THREADING Author keyword 24 56% 1% 29

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 PROTEIN STRUCTURE PREDICTION 96 30% 8% 267 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
2 FOLD RECOGNITION 85 51% 4% 120 Search FOLD+RECOGNITION Search FOLD+RECOGNITION
3 CASP 74 60% 2% 81 Search CASP Search CASP
4 PROTEIN STRUCTURE ALIGNMENT 42 72% 1% 33 Search PROTEIN+STRUCTURE+ALIGNMENT Search PROTEIN+STRUCTURE+ALIGNMENT
5 CAFASP 37 100% 0% 14 Search CAFASP Search CAFASP
6 PROTEIN STRUCTURE COMPARISON 35 56% 1% 43 Search PROTEIN+STRUCTURE+COMPARISON Search PROTEIN+STRUCTURE+COMPARISON
7 THREADING 33 34% 2% 80 Search THREADING Search THREADING
8 LIVEBENCH 30 100% 0% 12 Search LIVEBENCH Search LIVEBENCH
9 STRUCTURE ALIGNMENT 24 52% 1% 32 Search STRUCTURE+ALIGNMENT Search STRUCTURE+ALIGNMENT
10 PROTEIN THREADING 24 56% 1% 29 Search PROTEIN+THREADING Search PROTEIN+THREADING

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 FOLD RECOGNITION 189 44% 10% 324
2 STRUCTURE ALIGNMENT 173 54% 6% 220
3 SCOP 99 51% 4% 138
4 PSI BLAST 72 30% 6% 204
5 MYCOPLASMA GENITALIUM PROTEINS 69 83% 1% 39
6 CATH 65 62% 2% 68
7 SEQUENCE PROFILES 65 81% 1% 39
8 FOLD SPACE 47 64% 1% 46
9 STRUCTURE PREDICTION 44 11% 11% 368
10 SUPERFAMILIES 42 48% 2% 64

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre 2008 276 40 73%
Progress and challenges in protein structure prediction 2008 172 49 90%
Profile hidden Markov models 1998 2356 60 48%
MODELLER: Generation and refinement of homology-based protein structure models 2003 551 64 66%
Comparative modeling for protein structure prediction 2006 142 41 98%
Advances and pitfalls of protein structural alignment 2009 139 63 90%
A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction 2005 204 28 86%
The impact of structural genomics: Expectations and outcomes 2006 216 18 61%
Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction 2006 78 36 89%
Sequence comparison and protein structure prediction 2006 91 103 78%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 PL MOL ENGN 17 55% 0.6% 21
2 PRACT INFORMAT BIOINFORMAT GRP 11 78% 0.2% 7
3 PELS FAMILY BIOCHEM STRUCT BIOL 9 50% 0.4% 13
4 STUDY SYST BIOL 8 30% 0.7% 23
5 EBGM 8 50% 0.3% 11
6 BIOMOL STRUCT MODELLING UNIT 7 32% 0.6% 19
7 MED BIOL DIGITAL LIB 6 80% 0.1% 4
8 COMPUTAT BIOSCI SECT 6 71% 0.1% 5
9 EQUIPE BIOINFORMAT GENOM MOL 6 31% 0.4% 15
10 U726 5 41% 0.3% 9

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000256884 SECONDARY STRUCTURE PREDICTION//PROTEIN SECONDARY STRUCTURE PREDICTION//COMPOUND PYRAMID MODEL
2 0.0000219066 COMPLEX SCI SOFTWARE//3D ZERNIKE DESCRIPTOR//PROTEIN SURFACE SHAPE
3 0.0000218223 LOOP PREDICTION//LOOP MODELING//STEPWISE FOLDING
4 0.0000193154 EMBL OUTSTN//PROT INFORMAT OURCE//HLTH SCI TECHNOL ICIR
5 0.0000186413 HP MODEL//STATISTICAL POTENTIALS//PROTEIN STRUCTURE PREDICTION
6 0.0000185360 EVOLUTIONARY BIOINFORMAT//CLOSED LOOPS//SKEW PAIRS
7 0.0000164965 MULTIPLE SEQUENCE ALIGNMENT//T COFFEE//STATISTICAL ALIGNMENT
8 0.0000142901 CORRELATED MUTATIONS//CONTACT PREDICTION//CONTACT MAP PREDICTION
9 0.0000108302 COMPUTATIONAL PROTEIN DESIGN//DEAD END ELIMINATION//COMPUTATIONAL ENZYME DESIGN
10 0.0000084872 BIOINFORMAT TELEMED//HYDROPHOBICITY DEFICIENCY//HELIX INTERACTIONS