Class information for:
Level 1: CHIP SEQ//PEAK CALLING//DNASE SEQ

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
4630 1680 47.9 91%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
181 21089 CHROMATIN//EZH2//NUCLEOSOME

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 CHIP SEQ Author keyword 25 26% 5% 84
2 PEAK CALLING Author keyword 9 83% 0% 5
3 DNASE SEQ Author keyword 8 100% 0% 5
4 VERTEBRATE GENOM GRP Address 8 100% 0% 5
5 PIONEER FACTORS Author keyword 7 67% 0% 6
6 CHIA PET Author keyword 6 71% 0% 5
7 ENCODE PROJECT Author keyword 6 71% 0% 5
8 PROGRAM COMPUTAT BIOL BIOINFORMAT Address 5 12% 2% 39
9 FAIRE Author keyword 5 63% 0% 5
10 BASAM Address 5 50% 0% 7

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 CHIP SEQ 25 26% 5% 84 Search CHIP+SEQ Search CHIP+SEQ
2 PEAK CALLING 9 83% 0% 5 Search PEAK+CALLING Search PEAK+CALLING
3 DNASE SEQ 8 100% 0% 5 Search DNASE+SEQ Search DNASE+SEQ
4 PIONEER FACTORS 7 67% 0% 6 Search PIONEER+FACTORS Search PIONEER+FACTORS
5 CHIA PET 6 71% 0% 5 Search CHIA+PET Search CHIA+PET
6 ENCODE PROJECT 6 71% 0% 5 Search ENCODE+PROJECT Search ENCODE+PROJECT
7 FAIRE 5 63% 0% 5 Search FAIRE Search FAIRE
8 CHROMATIN LANDSCAPE 4 75% 0% 3 Search CHROMATIN+LANDSCAPE Search CHROMATIN+LANDSCAPE
9 H3K4ME1 4 75% 0% 3 Search H3K4ME1 Search H3K4ME1
10 H3K27AC 3 57% 0% 4 Search H3K27AC Search H3K27AC

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 CHIP SEQ 61 35% 8% 139
2 TRANSCRIPTION FACTOR BINDING 36 22% 9% 144
3 CHROMATIN SIGNATURES 34 47% 3% 53
4 EPIGENETIC CHARACTERIZATION 27 92% 1% 11
5 METHYLATIONS 25 43% 3% 44
6 HISTONE MODIFICATIONS 25 14% 9% 159
7 CHIP SEQ DATA 21 32% 3% 55
8 TISSUE SPECIFIC ENHANCERS 21 54% 2% 27
9 HUMAN CELL TYPES 21 61% 1% 22
10 SYSTEMATIC DISSECTION 21 85% 1% 11

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Transcriptional enhancers: from properties to genome-wide predictions 2014 50 152 41%
The selection and function of cell type-specific enhancers 2015 4 125 50%
ChIP-seq: advantages and challenges of a maturing technology 2009 530 96 39%
Modification of Enhancer Chromatin: What, How, and Why? 2013 111 123 28%
Enhancer RNAs and regulated transcriptional programs 2014 33 79 32%
Charting histone modifications and the functional organization of mammalian genomes 2011 301 114 30%
Evolution of transcription factor binding in metazoans - mechanisms and functional implications 2014 23 119 38%
Mapping Human Epigenomes 2013 63 148 34%
ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions 2012 110 99 45%
Computation for ChIP-seq and RNA-seq studies 2009 244 40 43%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 VERTEBRATE GENOM GRP 8 100% 0.3% 5
2 PROGRAM COMPUTAT BIOL BIOINFORMAT 5 12% 2.3% 39
3 BASAM 5 50% 0.4% 7
4 GENOME TECHNOL BIOL GRP 4 36% 0.5% 8
5 DOCTORAL PROGRAMME BIOMED EXPT BIOL 2 67% 0.1% 2
6 GENE REGULAT STEM CELLS CANC 2 67% 0.1% 2
7 WTCHG 2 67% 0.1% 2
8 FUNCT CANC EPIGENET 2 21% 0.5% 9
9 STEM CELL EPIGENET 2 24% 0.4% 7
10 QUANTITAT BIOMED SCI 2 14% 0.7% 12

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000190556 IROQUOIS//CONSERVED NONCODING ELEMENTS//ENERGY ENVIRONM BIOL COMP
2 0.0000171496 MOTIF DISCOVERY//CLOSEST STRING PROBLEM//MOTIF FINDING
3 0.0000136719 NUCLEOSOME POSITIONING//NUCLEOSOME//NUCLEOSOME MAPPING
4 0.0000097499 CTCF//CONTROL GENET PROC//ENHANCER BLOCKING
5 0.0000094784 CHROMOSOME TERRITORY//CHROMOSOME TERRITORIES//NUCLEAR ARCHITECTURE
6 0.0000090765 LONG NONCODING RNAS//LNCRNA//LONG NON CODING RNA
7 0.0000087159 RRBS//CPG ISLANDS//METHYLTRANSFERASE ACTIVITY
8 0.0000086015 RNA SEQ//DE NOVO ASSEMBLY//TRANSCRIPTOME ASSEMBLY
9 0.0000085644 HISTONE DEMETHYLASE//HISTONE DEMETHYLATION//LSD1
10 0.0000071918 GENOME ASSEMBLY//VARIANT CALLING//TARGET ENRICHMENT