Class information for:
Level 1: RNA SEQ//DE NOVO ASSEMBLY//TRANSCRIPTOME ASSEMBLY

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
7698 1259 41.6 86%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
1568 6715 NEXT GENERATION SEQUENCING//RNA SEQ//COPY NUMBER VARIATION

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 RNA SEQ Author keyword 37 16% 17% 218
2 DE NOVO ASSEMBLY Author keyword 9 24% 3% 33
3 TRANSCRIPTOME ASSEMBLY Author keyword 8 45% 1% 13
4 ILLUMINA PAIRED END SEQUENCING Author keyword 5 60% 0% 6
5 RNA SEQUENCING Author keyword 5 12% 3% 39
6 TRANSCRIPT DISCOVERY Author keyword 4 75% 0% 3
7 NSW SYST BIOL INITIAT Address 2 44% 0% 4
8 ABI SOLID Author keyword 2 67% 0% 2
9 CHAIR BIOINFORMAT GRP Address 2 67% 0% 2
10 CLIN GENET BIOINFORMAT Address 2 67% 0% 2

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 RNA SEQ 37 16% 17% 218 Search RNA+SEQ Search RNA+SEQ
2 DE NOVO ASSEMBLY 9 24% 3% 33 Search DE+NOVO+ASSEMBLY Search DE+NOVO+ASSEMBLY
3 TRANSCRIPTOME ASSEMBLY 8 45% 1% 13 Search TRANSCRIPTOME+ASSEMBLY Search TRANSCRIPTOME+ASSEMBLY
4 ILLUMINA PAIRED END SEQUENCING 5 60% 0% 6 Search ILLUMINA+PAIRED+END+SEQUENCING Search ILLUMINA+PAIRED+END+SEQUENCING
5 RNA SEQUENCING 5 12% 3% 39 Search RNA+SEQUENCING Search RNA+SEQUENCING
6 TRANSCRIPT DISCOVERY 4 75% 0% 3 Search TRANSCRIPT+DISCOVERY Search TRANSCRIPT+DISCOVERY
7 ABI SOLID 2 67% 0% 2 Search ABI+SOLID Search ABI+SOLID
8 DIGITAL GENE EXPRESSION TAG PROFILING DGE 2 67% 0% 2 Search DIGITAL+GENE+EXPRESSION+TAG+PROFILING+DGE Search DIGITAL+GENE+EXPRESSION+TAG+PROFILING+DGE
9 REPLANTING DISEASE 2 67% 0% 2 Search REPLANTING+DISEASE Search REPLANTING+DISEASE
10 SPOTTED SEAL PHOCA LARGHA 2 67% 0% 2 Search SPOTTED+SEAL+PHOCA+LARGHA Search SPOTTED+SEAL+PHOCA+LARGHA

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 SEQUENCE COUNT DATA 50 63% 4% 50
2 DIFFERENTIAL EXPRESSION ANALYSIS 33 26% 9% 109
3 RNA SEQ DATA 25 21% 8% 107
4 SEQ DATA 18 30% 4% 49
5 MAMMALIAN TRANSCRIPTOMES 16 61% 1% 17
6 SPLICE JUNCTIONS 15 34% 3% 35
7 CELL TRANSCRIPTOME 15 73% 1% 11
8 ROOT TRANSCRIPTOME 11 52% 1% 15
9 SEQ 11 15% 5% 67
10 REFERENCE GENOME 9 21% 3% 39

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
RNA-Seq: a revolutionary tool for transcriptomics 2009 2552 36 28%
Next-generation transcriptome assembly 2011 285 66 45%
RNA sequencing: advances, challenges and opportunities 2011 414 100 30%
Computational methods for transcriptome annotation and quantification using RNA-seq 2011 242 75 47%
RNA-Seq: revelation of the messengers 2013 29 13 77%
Transcriptomics in the RNA-seq era 2013 52 69 42%
RNA-Seq Technology and Its Application in Fish Transcriptomics 2014 11 117 31%
Library preparation methods for next-generation sequencing: Tone down the bias 2014 22 42 17%
Microarrays, deep sequencing and the true measure of the transcriptome 2011 156 45 36%
From RNA-seq reads to differential expression results 2010 166 84 48%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 NSW SYST BIOL INITIAT 2 44% 0.3% 4
2 CHAIR BIOINFORMAT GRP 2 67% 0.2% 2
3 CLIN GENET BIOINFORMAT 2 67% 0.2% 2
4 COOPERAT INNOVAT CULTIVAT UTILIZAT NONWOOD 2 67% 0.2% 2
5 FUNCT GENOM TECHNOL TEAM 2 67% 0.2% 2
6 STATE FO T TREE GENET BREEDING 2 67% 0.2% 2
7 SYST PHARMACOL BIOMARKERS 2 67% 0.2% 2
8 OMICS SCI 2 17% 0.9% 11
9 PREVENT MED DIAG INNOVAT PROGRAM PMI 2 43% 0.2% 3
10 AGRILIFE GENOM SERV 1 100% 0.2% 2

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000180168 GENOME ASSEMBLY//VARIANT CALLING//TARGET ENRICHMENT
2 0.0000148597 DIGITAL PCR//DROPLET DIGITAL PCR//SINGLE CELL TRANSCRIPTOMICS
3 0.0000109858 SPLICED LEADER//TRANS SPLICING//CIRCULAR RNA
4 0.0000107270 SERIAL ANALYSIS OF GENE EXPRESSION//SAGE//GLGI
5 0.0000086015 CHIP SEQ//PEAK CALLING//DNASE SEQ
6 0.0000084945 LONG NONCODING RNAS//LNCRNA//LONG NON CODING RNA
7 0.0000075860 MAPPING BY SEQUENCING//RADSEQ//REDUCED REPRESENTATION LIBRARIES
8 0.0000075452 SR PROTEINS//SR PROTEIN//ALTERNATIVE SPLICING
9 0.0000072939 EQTL//GENETICAL GENOMICS//ALLELE SPECIFIC GENE EXPRESSION
10 0.0000063382 CIS MOTIF//ARABIDOPSIS T87 CELL LINE//GENE ATLAS