Class information for:
Level 2: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//PROTEIN FOLDING

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
42 31225 44.9 79%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 3)


ID, lev.
above		 Publications Label for level above
204 48455 PROTEIN FOLDING//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION

Classes in level below (level 1)


ID, lev. below Publications Label for level below
436 3404 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP
1071 2771 PROTEIN FOLDING//PHI VALUE//CONTACT ORDER
3401 1917 PSEUDO AMINO ACID COMPOSITION//COMPUTAT MUTAT PROJECT//JACKKNIFE TEST
3431 1911 ENVIRONM IND CHEM//ONE STEP PERTURBATION//SAMPL4
4124 1767 BETA HAIRPIN//SIDE CHAIN INTERACTIONS//TRP CAGE
4359 1724 HP MODEL//STATISTICAL POTENTIALS//PROTEIN STRUCTURE PREDICTION
4652 1677 ELASTIC NETWORK MODEL//ELASTIC NETWORK MODELS//NORMAL MODE ANALYSIS
5503 1548 CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING
6076 1467 POISSON BOLTZMANN EQUATION//POISSON BOLTZMANN//BIOMOLECULAR ELECTROSTATICS
6257 1443 BAKER CHEM CHEM BIOL//REPLICA EXCHANGE METHOD//GENERALIZED ENSEMBLE ALGORITHM
6889 1355 DIPARTIMENTO SCI BIOL AMBIENTALI//CAVITY CREATION//WORK OF CAVITY CREATION
8439 1184 MARKOV STATE MODELS//TRANSITION PATH SAMPLING//TRANSITION PATH THEORY
8680 1160 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//PROTEIN THERMOSTABILITY
9414 1089 COMPLEX SCI SOFTWARE//3D ZERNIKE DESCRIPTOR//PROTEIN SURFACE SHAPE
9998 1037 BIOL RUMENTAT//INTRINSICALLY DISORDERED PROT//INTRINSICALLY DISORDERED PROTEIN
10422 999 SECONDARY STRUCTURE PREDICTION//PROTEIN SECONDARY STRUCTURE PREDICTION//COMPOUND PYRAMID MODEL
11788 890 NSSNP//POLYPHEN//NSSNPS
11978 876 POLYPROLINE II//RANDOM COIL//COIL LIBRARY
12864 814 COMPUTATIONAL PROTEIN DESIGN//DEAD END ELIMINATION//COMPUTATIONAL ENZYME DESIGN
18572 480 CORRELATED MUTATIONS//CONTACT PREDICTION//CONTACT MAP PREDICTION
19200 451 INTERACTION PROPENSITY//RNA BINDING RESIDUES//COMPUTAT INTELLIGENCE LEARNING DISCOVERY
19863 422 VORONOI DIAGRAM//VORONOI DIAGRAM OF SPHERES//BETA SHAPE
21380 362 LOOP PREDICTION//LOOP MODELING//STEPWISE FOLDING
25935 221 PROTEIN HYDRATION//INTERNAL SOLVENT//SOLVENT MODELING
27893 179 BIOINFORMAT TELEMED//HYDROPHOBICITY DEFICIENCY//HELIX INTERACTIONS
34174 77 DEHYDRON//KINASE TARGETING//ONCOKINOME

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Journal 936 35% 7% 2147
2 PROTEIN STRUCTURE PREDICTION Author keyword 677 68% 2% 600
3 PROTEIN FOLDING Author keyword 563 29% 5% 1651
4 PSEUDO AMINO ACID COMPOSITION Author keyword 329 94% 0% 119
5 FOLD RECOGNITION Author keyword 185 68% 1% 161
6 PROTEIN SCIENCE Journal 142 15% 3% 884
7 CASP Author keyword 135 74% 0% 100
8 STRUCTURE PREDICTION Author keyword 129 39% 1% 265
9 COMPUTATIONAL PROTEIN DESIGN Author keyword 129 79% 0% 84
10 BETA HAIRPIN Author keyword 123 66% 0% 114

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class		 LCSH search Wikipedia search
1 PROTEIN STRUCTURE PREDICTION 677 68% 2% 600 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
2 PROTEIN FOLDING 563 29% 5% 1651 Search PROTEIN+FOLDING Search PROTEIN+FOLDING
3 PSEUDO AMINO ACID COMPOSITION 329 94% 0% 119 Search PSEUDO+AMINO+ACID+COMPOSITION Search PSEUDO+AMINO+ACID+COMPOSITION
4 FOLD RECOGNITION 185 68% 1% 161 Search FOLD+RECOGNITION Search FOLD+RECOGNITION
5 CASP 135 74% 0% 100 Search CASP Search CASP
6 STRUCTURE PREDICTION 129 39% 1% 265 Search STRUCTURE+PREDICTION Search STRUCTURE+PREDICTION
7 COMPUTATIONAL PROTEIN DESIGN 129 79% 0% 84 Search COMPUTATIONAL+PROTEIN+DESIGN Search COMPUTATIONAL+PROTEIN+DESIGN
8 BETA HAIRPIN 123 66% 0% 114 Search BETA+HAIRPIN Search BETA+HAIRPIN
9 THREADING 108 56% 0% 132 Search THREADING Search THREADING
10 PROTEIN STRUCTURE 96 16% 2% 567 Search PROTEIN+STRUCTURE Search PROTEIN+STRUCTURE

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 GLOBULAR PROTEINS 815 38% 5% 1689
2 FOLD RECOGNITION 619 70% 2% 513
3 FUNCTIONAL DOMAIN COMPOSITION 498 89% 1% 221
4 CONTACT ORDER 495 82% 1% 291
5 CHYMOTRYPSIN INHIBITOR 2 491 75% 1% 356
6 STRUCTURE PREDICTION 426 33% 3% 1075
7 ENZYME SUBFAMILY CLASSES 422 97% 0% 115
8 SUBCELLULAR LOCATION PREDICTION 420 91% 1% 171
9 AMINO ACID COMPOSITION 420 40% 3% 834
10 STRUCTURAL CLASS PREDICTION 414 91% 1% 169

Journals


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 936 35% 7% 2147
2 PROTEIN SCIENCE 142 15% 3% 884
3 BIOINFORMATICS 121 11% 3% 1048
4 JOURNAL OF COMPUTATIONAL CHEMISTRY 121 14% 3% 803
5 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 105 16% 2% 609
6 PROTEIN ENGINEERING 87 19% 1% 419
7 BMC BIOINFORMATICS 73 10% 2% 674
8 FOLDING & DESIGN 66 51% 0% 91
9 BMC STRUCTURAL BIOLOGY 57 32% 0% 151
10 CURRENT OPINION IN STRUCTURAL BIOLOGY 49 15% 1% 310

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
CHARMM: The Biomolecular Simulation Program 2009 2048 616 44%
Intrinsically disordered proteins in cellular signalling and regulation 2015 17 138 53%
The Amber biomolecular simulation programs 2005 2779 124 52%
Some remarks on protein attribute prediction and pseudo amino acid composition 2011 329 197 90%
iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components 2014 48 110 88%
Locating proteins in the cell using TargetP, SignalP and related tools 2007 1418 110 41%
All-atom empirical potential for molecular modeling and dynamics studies of proteins 1998 6458 78 32%
Interfaces and the driving force of hydrophobic assembly 2005 1314 46 70%
The ensemble nature of allostery 2014 69 91 47%
Recent progress in protein subcellular location prediction 2007 474 77 91%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 COMPUTAT BIOL BIOINFORMAT 106 27% 1.1% 345
2 BAKER CHEM CHEM BIOL 105 51% 0.5% 145
3 SACKLER MOL MED 98 47% 0.5% 152
4 COMPUTAT MUTAT PROJECT 82 92% 0.1% 33
5 CUBIC 60 72% 0.2% 48
6 CHIM BIOPHYS 59 45% 0.3% 98
7 BIOL RUMENTAT 54 34% 0.4% 130
8 STUDY SYST BIOL 50 64% 0.2% 49
9 THEORET BIOL PHYS 48 23% 0.6% 180
10 BIOMOL STRUCT MODELLING UNIT 47 68% 0.1% 41

Related classes at same level (level 2)


Rank Relatedness score Related classes
1 0.0000017352 MOLTEN GLOBULE//APOMYOGLOBIN//PROTEIN FORMULATION
2 0.0000014465 DISSIPATIVE PARTICLE DYNAMICS//FLUCTUATING HYDRODYNAMICS//MADELUNG CONSTANT
3 0.0000013077 CELL FREE PROTEIN SYNTHESIS//MEMBRANE PROTEIN//RIBOSOME DISPLAY
4 0.0000011671 VALENCE TOPOLOGICAL CHARGE TRANSFER INDEX//UNIV CIENCIA MOL//STELLA AVRAM GOREN GOLDSTEIN BIOTECHNOL EN
5 0.0000011561 JOURNAL OF CHEMICAL INFORMATION AND MODELING//B IT//JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES
6 0.0000011325 UNITA RIC ROMA TRE//DYNAMICAL TRANSITION//UFR PHITEM
7 0.0000010947 VALLEY RIDGE INFLECTION POINT//NEWTON TRAJECTORY//GRADIENT EXTREMAL
8 0.0000010627 BIOINFORMATICS//BMC BIOINFORMATICS//GENOME RESEARCH
9 0.0000010624 ARTIFICIAL METALLOENZYMES//COILED COIL//PROTEIN DESIGN
10 0.0000010559 HIV 1 PROTEASE//HIV PROTEASE//KNI 272