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Juan Sebastian Diaz Boada: Polypharmacy side effect prediction with Graph Convolutional Neural Networks based on heterogeneous structural and biological Data

MSc Thesis in Scientific Computing

Time: Fri 2021-01-22 15.00

Location: Zoom, email organiser

Subject area: Scientific Computing

Respondent: Juan Sebastian Diaz Boada

Opponent: Francesco Ferranti

Supervisor: Narsis Kiani (KI), Michael Hanke

Abstract

The prediction of polypharmacy side effects is crucial to reduce the mortality and morbidity of patients suffering from complex diseases. However, its experimental prediction is unfeasible due to the many possible drug combinations, leaving in silico tools as the most promising way of addressing this problem. This thesis improves the performance and robustness of a state-of-the-art graph convolutional network designed to predict polypharmacy side effects, by feeding it with complexity properties of the drug-protein network. The modifications also involve the creation of a direct pipeline to reproduce the results and test it with different datasets.

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Last changed: Jan 13, 2021