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Publications by Olof Emanuelsson

Peer reviewed

Articles

[1]
K. J. Westrin, W. W. Kretzschmar and O. Emanuelsson, "ClusTrast : a short read de novo transcript isoform assembler guided by clustered contigs," BMC Bioinformatics, vol. 25, no. 1, 2024.
[2]
S. Akhter et al., "Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway," New Phytologist, vol. 236, no. 5, pp. 1951-1963, 2022.
[3]
J. J. A. Armenteros et al., "Detecting sequence signals in targeting peptides using deep learning," Life Science Alliance, vol. 2, no. 5, 2019.
[7]
B. Sigurgeirsson, O. Emanuelsson and J. Lundeberg, "Analysis of stranded information using an automated procedure for strand specific RNA sequencing," BMC Genomics, vol. 15, no. 1, 2014.
[8]
Y. Song et al., "Nuclease-Assisted Suppression of Human DNA Background in Sepsis," PLOS ONE, vol. 9, no. 7, pp. e103610, 2014.
[9]
B. Sigurgeirsson, O. Emanuelsson and J. Lundeberg, "Sequencing Degraded RNA Addressed by 3' Tag Counting," PLOS ONE, vol. 9, no. 3, pp. e91851, 2014.
[12]
V. Höiom et al., "Hereditary uveal melanoma : A report of a germline mutation in BAP1," Genes, Chromosomes and Cancer, vol. 52, no. 4, pp. 378-384, 2013.
[14]
D. Klevebring et al., "Analysis of transcript and protein overlap in a human osteosarcoma cell line," BMC Genomics, vol. 11, no. 1, pp. 684, 2010.
[19]
O. Emanuelsson et al., "Locating proteins in the cell using TargetP, SignalP and related tools.," Nature Protocols, vol. 2, no. 4, pp. 953-971, 2007.
[21]
M. B. Gerstein et al., "What is a gene, post-ENCODE? : History and updated definition," Genome Research, vol. 17, no. 6, pp. 669-681, 2007.
[22]
P. Bertone et al., "Design optimization methods for genomic DNA tiling arrays.," Genome Research, vol. 16, no. 2, pp. 271-281, 2006.
[23]
T. E. Royce et al., "Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies," Methods in Enzymology, vol. 411, pp. 282-311, 2006.
[24]
[25]
E. J. White et al., "DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states," Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 51, pp. 17771-17776, 2004.
[26]
O. Emanuelsson et al., "In silico prediction of the peroxisomal proteome in fungi, plants and animals.," Journal of Molecular Biology, vol. 330, no. 2, pp. 443-456, 2003.
[27]
I. Westerlund, G. Von Heijne and O. Emanuelsson, "LumenP - a neural network predictor for protein localization in the thylakoid lumen," Protein Science, vol. 12, no. 10, pp. 2360-2366, 2003.
[29]
O. Emanuelsson, "Predicting protein subcellular localisation from amino acid sequence information.," Briefings in Bioinformatics, vol. 3, no. 4, pp. 361-76, 2002.
[30]
O. Emanuelsson, G. von Heijne and G. Schneider, "Analysis and prediction of mitochondrial targeting peptides.," Methods in Cell Biology, vol. 65, pp. 175-187, 2001.
[31]
O. Emanuelsson and G. von Heijne, "Prediction of organellar targeting signals.," Biochimica et Biophysica Acta. Molecular Cell Research, vol. 1541, no. 1-2, pp. 114-119, 2001.
[32]
O. Emanuelsson et al., "Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.," Journal of Molecular Biology, vol. 300, no. 4, pp. 1005-1016, 2000.
[33]
O. Emanuelsson, H. Nielsen and G. von Heijne, "ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites.," Protein Science, vol. 8, no. 5, pp. 978-984, 1999.

Conference papers

[34]
O. Emanuelsson, L. Arvestad and L. Käll, "Engagera och aktivera studenter med inspiration från konferenser : examination genom poster-presentation," in Proceedings 2014, 8:e Pedagogiska inspirationskonferensen 17 december 2014, 2014.

Non-peer reviewed

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2024-10-31 00:08:51