Class information for:
Level 1: PDZ DOMAIN//SYNTENIN//MAGUK

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
11898 946 45.1 94%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
11 4 NEUROSCIENCES//CLINICAL NEUROLOGY//NEUROL 1112395
100 3       NEUROSCIENCES//METABOTROPIC GLUTAMATE RECEPTOR//HIPPOCAMPUS 73970
891 2             POSTSYNAPTIC DENSITY//LONG TERM POTENTIATION//SYNAPTIC PLASTICITY 11396
11898 1                   PDZ DOMAIN//SYNTENIN//MAGUK 946

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PDZ DOMAIN authKW 803223 12% 22% 113
2 SYNTENIN authKW 422199 2% 59% 22
3 MAGUK authKW 365131 4% 31% 37
4 PDZ authKW 356150 5% 21% 52
5 PTPN13 authKW 230543 1% 71% 10
6 PSD 95 SAP90 authKW 229523 1% 89% 8
7 MDA 9 SYNTENIN authKW 225938 1% 100% 7
8 PTPL1 authKW 206569 1% 80% 8
9 PSD 93 authKW 205544 1% 58% 11
10 PSD 95 authKW 178992 5% 12% 45

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 3692 52% 0% 491
2 Cell Biology 1907 24% 0% 228
3 Biophysics 1029 13% 0% 121
4 Neurosciences 552 16% 0% 153
5 Genetics & Heredity 191 7% 0% 69
6 Oncology 143 8% 0% 80
7 Biochemical Research Methods 138 5% 0% 47
8 Biotechnology & Applied Microbiology 84 5% 0% 52
9 Developmental Biology 54 2% 0% 18
10 Mathematical & Computational Biology 53 2% 0% 16

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLATE FORME BIOPHYS MACROMOL 96831 0% 100% 3
2 MOL DYNAM DESIGN 64554 0% 100% 2
3 PROGRAM CELL REGULAT 43035 0% 67% 2
4 TAKAI BIOTIMER PROJECT 43027 1% 22% 6
5 VCU MASSEY CANC 37766 1% 10% 12
6 EXPT MEDMACROMOL CRYSTALLOG UNIT 36308 0% 38% 3
7 GLYCOBIOL DEV GENET 36302 1% 19% 6
8 UNITE ONANCE MAGNET NUCL BIOMOL 35933 1% 16% 7
9 ANAT CELLULAR BIOLSECT HEMATOL ONCOL 32277 0% 100% 1
10 ARBEITSGRP BIOPHYS ANALYT 32277 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 STRUCTURE 2152 2% 0% 16
2 JOURNAL OF BIOLOGICAL CHEMISTRY 1775 10% 0% 94
3 MOLECULAR AND CELLULAR DIFFERENTIATION 1465 0% 5% 1
4 GENES TO CELLS 1351 1% 0% 9
5 HEMATOPATHOLOGY AND MOLECULAR HEMATOLOGY 1007 0% 3% 1
6 BIOMOLECULAR NMR ASSIGNMENTS 732 0% 1% 4
7 JOURNAL OF NEUROSCIENCE 706 3% 0% 28
8 NEURON 549 1% 0% 12
9 GENOMICS 541 1% 0% 12
10 FEBS LETTERS 496 3% 0% 26

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PDZ DOMAIN 803223 12% 22% 113 Search PDZ+DOMAIN Search PDZ+DOMAIN
2 SYNTENIN 422199 2% 59% 22 Search SYNTENIN Search SYNTENIN
3 MAGUK 365131 4% 31% 37 Search MAGUK Search MAGUK
4 PDZ 356150 5% 21% 52 Search PDZ Search PDZ
5 PTPN13 230543 1% 71% 10 Search PTPN13 Search PTPN13
6 PSD 95 SAP90 229523 1% 89% 8 Search PSD+95+SAP90 Search PSD+95+SAP90
7 MDA 9 SYNTENIN 225938 1% 100% 7 Search MDA+9+SYNTENIN Search MDA+9+SYNTENIN
8 PTPL1 206569 1% 80% 8 Search PTPL1 Search PTPL1
9 PSD 93 205544 1% 58% 11 Search PSD+93 Search PSD+93
10 PSD 95 178992 5% 12% 45 Search PSD+95 Search PSD+95

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 CHI, CN , BACH, A , STROMGAARD, K , GIANNI, S , JEMTH, P , (2012) LIGAND BINDING BY PDZ DOMAINS.BIOFACTORS. VOL. 38. ISSUE 5. P. 338 -348 66 63% 12
2 IVARSSON, Y , (2012) PLASTICITY OF PDZ DOMAINS IN LIGAND RECOGNITION AND SIGNALING.FEBS LETTERS. VOL. 586. ISSUE 17. P. 2638-2647 68 50% 40
3 TOTO, A , PEDERSEN, SW , KARLSSON, OA , MORAN, GE , ANDERSSON, E , CHI, CN , STROMGAARD, K , GIANNI, S , JEMTH, P , (2016) LIGAND BINDING TO THE PDZ DOMAINS OF POSTSYNAPTIC DENSITY PROTEIN 95.PROTEIN ENGINEERING DESIGN & SELECTION. VOL. 29. ISSUE 5. P. 169 -175 41 89% 0
4 LEE, HJ , ZHENG, JJ , (2010) PDZ DOMAINS AND THEIR BINDING PARTNERS: STRUCTURE, SPECIFICITY, AND MODIFICATION.CELL COMMUNICATION AND SIGNALING. VOL. 8. ISSUE . P. - 68 41% 147
5 YE, F , ZHANG, MJ , (2013) STRUCTURES AND TARGET RECOGNITION MODES OF PDZ DOMAINS: RECURRING THEMES AND EMERGING PICTURES.BIOCHEMICAL JOURNAL. VOL. 455. ISSUE . P. 1-14 49 49% 44
6 MONTGOMERY, JM , ZAMORANO, PL , GARNER, CC , (2004) MAGUKS IN SYNAPSE ASSEMBLY AND FUNCTION: AN EMERGING VIEW.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 61. ISSUE 7-8. P. 911-929 75 43% 75
7 LUCK, K , CHARBONNIER, S , TRAVE, G , (2012) THE EMERGING CONTRIBUTION OF SEQUENCE CONTEXT TO THE SPECIFICITY OF PROTEIN INTERACTIONS MEDIATED BY PDZ DOMAINS.FEBS LETTERS. VOL. 586. ISSUE 17. P. 2648 -2661 50 49% 32
8 SHENG, M , SALA, C , (2001) PDZ DOMAINS AND THE ORGANIZATION OF SUPRAMOLECULAR COMPLEXES.ANNUAL REVIEW OF NEUROSCIENCE. VOL. 24. ISSUE . P. 1 -29 51 37% 827
9 IMAMURA, F , MAEDA, S , DOI, T , FUJIYOSHI, Y , (2002) LIGAND BINDING OF THE SECOND PDZ DOMAIN REGULATES CLUSTERING OF PSD-95 WITH THE KV1.4 POTASSIUM CHANNEL.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 277. ISSUE 5. P. 3640-3646 40 75% 37
10 NISSEN, KB , HAUGAARD-KEDSTROM, LM , WILBEK, TS , NIELSEN, LS , ABERG, E , KRISTENSEN, AS , BACH, A , JEMTH, P , STROMGAARD, K , (2015) TARGETING PROTEIN-PROTEIN INTERACTIONS WITH TRIMERIC LIGANDS: HIGH AFFINITY INHIBITORS OF THE MAGUK PROTEIN FAMILY.PLOS ONE. VOL. 10. ISSUE 2. P. - 32 70% 0

Classes with closest relation at Level 1


Rank Class id link
1 11431 CRUMBS//SCRIBBLE//ERBIN
2 27910 SYNGAP1//GENES COGNIT PROGRAMME//SYNGAP
3 7158 AMPA RECEPTOR//STARGAZIN//PICK1
4 28533 MYOPODIN//PDLIM5//CLP36
5 16099 SHANK3//HOMER//HOMER PROTEINS
6 10904 EZRIN//MOESIN//RADIXIN
7 15664 NEUROLIGIN//NEUREXIN//NRXN1
8 12290 SH3 DOMAIN//SH2 DOMAIN//GRB2
9 2042 NMDA RECEPTOR//NR2B//NR2A
10 15103 HTRA1//HTRA//HTRA2

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