Class information for:
Level 1: CHLOROPLAST GENOME//PLASTOME//PLASTID GENOME

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
15522 708 49.9 79%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
271 3       MITOCHONDRIA//MITOCHONDRIAL GENOME//MITOCHONDRIAL DNA PART A 43930
976 2             MITOCHONDRIAL GENOME//MITOCHONDRIAL DNA PART A//MITOCHONDRIAL DNA 10638
15522 1                   CHLOROPLAST GENOME//PLASTOME//PLASTID GENOME 708

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CHLOROPLAST GENOME authKW 2858420 21% 44% 151
2 PLASTOME authKW 848284 6% 46% 43
3 PLASTID GENOME authKW 821762 7% 39% 49
4 COMPLETE CHLOROPLAST GENOME authKW 401416 2% 85% 11
5 PATTERSON S 141 address 176099 1% 58% 7
6 CHLOROPLAST GENOME SEQUENCE authKW 172511 1% 100% 4
7 CUPRESSOPHYTES authKW 172511 1% 100% 4
8 LATHRAEA CLANDESTINA authKW 172511 1% 100% 4
9 MOE BIO OURCES ECOENVIRONM address 148703 1% 34% 10
10 MOTH ORCHIDS authKW 138007 1% 80% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Evolutionary Biology 15181 31% 0% 217
2 Genetics & Heredity 11156 52% 0% 367
3 Plant Sciences 6022 41% 0% 288
4 Biochemistry & Molecular Biology 839 31% 0% 220
5 Biodiversity Conservation 202 3% 0% 20
6 Horticulture 176 3% 0% 20
7 Biotechnology & Applied Microbiology 159 8% 0% 55
8 Multidisciplinary Sciences 73 2% 0% 14
9 Ecology 32 4% 0% 25
10 Forestry 28 1% 0% 10

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PATTERSON S 141 176099 1% 58% 7
2 MOE BIO OURCES ECOENVIRONM 148703 1% 34% 10
3 BIOL S 404 86255 0% 100% 2
4 MIPS IBI BIOINFORMAT SYST BIOL 86255 0% 100% 2
5 STATE TREE BREEDING FO T GENET 86255 0% 100% 2
6 CAS PLANT GERMPLASM ENHANCEMENT SPECIAL 62718 1% 18% 8
7 NUCLEO FIXACAO BIOL NITROGENIO 57502 0% 67% 2
8 PLANT GERMPLASM GENOM 53815 2% 9% 14
9 GERMPLASM BANK WILD SPECIES 47198 2% 8% 14
10 GERMPLASM BANK WILD SPECIES SOUTHWEST CHINA 44951 1% 15% 7

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MITOCHONDRIAL DNA PART A 80823 8% 3% 54
2 GENOME BIOLOGY AND EVOLUTION 26850 4% 2% 29
3 APPLICATIONS IN PLANT SCIENCES 21537 2% 4% 14
4 CONSERVATION GENETICS RESOURCES 11033 3% 1% 20
5 DNA RESEARCH 8184 2% 2% 11
6 MOLECULAR BIOLOGY AND EVOLUTION 7887 5% 1% 32
7 BMC PLANT BIOLOGY 4717 2% 1% 16
8 AMERICAN JOURNAL OF BOTANY 4315 4% 0% 27
9 FRONTIERS IN PLANT SCIENCE 4191 3% 0% 22
10 BMC EVOLUTIONARY BIOLOGY 3290 2% 0% 16

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CHLOROPLAST GENOME 2858420 21% 44% 151 Search CHLOROPLAST+GENOME Search CHLOROPLAST+GENOME
2 PLASTOME 848284 6% 46% 43 Search PLASTOME Search PLASTOME
3 PLASTID GENOME 821762 7% 39% 49 Search PLASTID+GENOME Search PLASTID+GENOME
4 COMPLETE CHLOROPLAST GENOME 401416 2% 85% 11 Search COMPLETE+CHLOROPLAST+GENOME Search COMPLETE+CHLOROPLAST+GENOME
5 CHLOROPLAST GENOME SEQUENCE 172511 1% 100% 4 Search CHLOROPLAST+GENOME+SEQUENCE Search CHLOROPLAST+GENOME+SEQUENCE
6 CUPRESSOPHYTES 172511 1% 100% 4 Search CUPRESSOPHYTES Search CUPRESSOPHYTES
7 LATHRAEA CLANDESTINA 172511 1% 100% 4 Search LATHRAEA+CLANDESTINA Search LATHRAEA+CLANDESTINA
8 MOTH ORCHIDS 138007 1% 80% 4 Search MOTH+ORCHIDS Search MOTH+ORCHIDS
9 PACMAD CLADE 129383 0% 100% 3 Search PACMAD+CLADE Search PACMAD+CLADE
10 INVERTED REPEAT 117915 3% 14% 19 Search INVERTED+REPEAT Search INVERTED+REPEAT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 DANIELL, H , LIN, CS , YU, M , CHANG, WJ , (2016) CHLOROPLAST GENOMES: DIVERSITY, EVOLUTION, AND APPLICATIONS IN GENETIC ENGINEERING.GENOME BIOLOGY. VOL. 17. ISSUE . P. - 136 45% 3
2 DONG, WP , XU, C , CHENG, T , ZHOU, SL , (2013) COMPLETE CHLOROPLAST GENOME OF SEDUM SARMENTOSUM AND CHLOROPLAST GENOME EVOLUTION IN SAXIFRAGALES.PLOS ONE. VOL. 8. ISSUE 10. P. - 47 71% 13
3 NAUMANN, J , DER, JP , WAFULA, EK , JONES, SS , WAGNER, ST , HONAAS, LA , RALPH, PE , BOLIN, JF , MAASS, E , NEINHUIS, C , ET AL (2016) DETECTING AND CHARACTERIZING THE HIGHLY DIVERGENT PLASTID GENOME OF THE NONPHOTOSYNTHETIC PARASITIC PLANT HYDNORA VISSERI (HYDNORACEAE).GENOME BIOLOGY AND EVOLUTION. VOL. 8. ISSUE 2. P. 345 -363 47 51% 4
4 WICKE, S , SCHNEEWEISS, GM , DEPAMPHILIS, CW , MULLER, KF , QUANDT, D , (2011) THE EVOLUTION OF THE PLASTID CHROMOSOME IN LAND PLANTS: GENE CONTENT, GENE ORDER, GENE FUNCTION.PLANT MOLECULAR BIOLOGY. VOL. 76. ISSUE 3-5. P. 273 -297 73 32% 138
5 YANG, JB , TANG, M , LI, HT , ZHANG, ZR , LI, DZ , (2013) COMPLETE CHLOROPLAST GENOME OF THE GENUS CYMBIDIUM: LIGHTS INTO THE SPECIES IDENTIFICATION, PHYLOGENETIC IMPLICATIONS AND POPULATION GENETIC ANALYSES.BMC EVOLUTIONARY BIOLOGY. VOL. 13. ISSUE . P. - 39 57% 44
6 BODIN, SS , KIM, JS , KIM, JH , (2016) PHYLOGENETIC INFERENCES AND THE EVOLUTION OF PLASTID DNA IN CAMPYNEMATACEAE AND THE MYCOHETEROTROPHIC CORSIA DISPAR D.L JONES & B. GRAY (CORSIACEAE).PLANT MOLECULAR BIOLOGY REPORTER. VOL. 34. ISSUE 1. P. 192 -210 37 65% 1
7 WANG, WC , CHEN, SY , ZHANG, XZ , (2016) CHLOROPLAST GENOME EVOLUTION IN ACTINIDIACEAE: CLPP LOSS, HETEROGENOUS DIVERGENCE AND PHYLOGENOMIC PRACTICE.PLOS ONE. VOL. 11. ISSUE 9. P. - 42 61% 0
8 NI, LH , ZHAO, ZL , XU, HX , CHEN, SL , DORJE, G , (2016) THE COMPLETE CHLOROPLAST GENOME OF GENTIANA STRAMINEA (GENTIANACEAE), AN ENDEMIC SPECIES TO THE SINO-HIMALAYAN SUBREGION.GENE. VOL. 577. ISSUE 2. P. 281 -288 32 62% 3
9 CUSIMANO, N , WICKE, S , (2016) MASSIVE INTRACELLULAR GENE TRANSFER DURING PLASTID GENOME REDUCTION IN NONGREEN OROBANCHACEAE.NEW PHYTOLOGIST. VOL. 210. ISSUE 2. P. 680 -693 33 49% 7
10 SCHWARZ, EN , RUHLMAN, TA , SABIR, JSM , HAJRAH, NH , ALHARBI, NS , AL-MALKI, AL , BAILEY, CD , JANSEN, RK , (2015) PLASTID GENOME SEQUENCES OF LEGUMES REVEAL PARALLEL INVERSIONS AND MULTIPLE LOSSES OF RPS16 IN PAPILIONOIDS.JOURNAL OF SYSTEMATICS AND EVOLUTION. VOL. 53. ISSUE 5. P. 458 -468 37 62% 3

Classes with closest relation at Level 1


Rank Class id link
1 1111 PLASTID TRANSFORMATION//CHLOROPLAST TRANSFORMATION//CHLOROPLAST
2 25557 NUMT//NUMTS//MITOCHONDRIAL PSEUDOGENES
3 23753 PLASTID INHERITANCE//PLASTOME GENOME INCOMPATIBILITY//ANISOGAMY
4 1252 CYTOPLASMIC MALE STERILITY//RNA EDITING//CYTOPLASMIC MALE STERILITY CMS
5 28614 CONVOLVULACEAE//DODDERS//CUSCUTA
6 20447 BAMBUSOIDEAE//WOODY BAMBOOS//BAMBUSEAE
7 1634 BASAL ANGIOSPERMS//ANGIOSPERMS//NYMPHAEALES
8 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
9 19419 OROBANCHACEAE//SCROPHULARIACEAE//VERONICA
10 12927 POACEAE//PANICEAE//STIPEAE

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