Class information for:
Level 1: INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
18004 571 48.1 89%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
18004 1                   INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES 571

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 INTERACTION PROPENSITY authKW 320855 1% 100% 6
2 PROTEIN RNA INTERACTIONS authKW 181241 4% 17% 20
3 DNA BINDING RESIDUES authKW 160427 1% 100% 3
4 RNA BINDING RESIDUES authKW 160427 1% 100% 3
5 CROSS LINKING AND IMMUNOPRECIPITATION authKW 106952 0% 100% 2
6 DIRECT AND INDIRECT READOUTS authKW 106952 0% 100% 2
7 DNA PROTEIN RECOGNITION MODULE authKW 106952 0% 100% 2
8 INTERACTOME CAPTURE authKW 106952 0% 100% 2
9 INTERFACE CLASS authKW 106952 0% 100% 2
10 OFF INFORMATIZAT MANAGEMENT PLANNING address 106952 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 5214 18% 0% 101
2 Biochemistry & Molecular Biology 2699 57% 0% 323
3 Biochemical Research Methods 2165 21% 0% 120
4 Biotechnology & Applied Microbiology 1291 21% 0% 120
5 Biophysics 530 12% 0% 68
6 Genetics & Heredity 250 10% 0% 57
7 Computer Science, Interdisciplinary Applications 169 5% 0% 30
8 Cell Biology 162 11% 0% 60
9 Biology 63 4% 0% 21
10 Medical Informatics 5 1% 0% 3

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 OFF INFORMATIZAT MANAGEMENT PLANNING 106952 0% 100% 2
2 HLTH INFORMAT TRANSLAT SCI HITS 5021 71300 0% 67% 2
3 COMPUTAT INTELLIGENCE LEARNING DISCOVERY 60157 1% 38% 3
4 GOLDEN AUDIT 60157 1% 38% 3
5 BIOCHEM MOL PHARMACOL MED 53476 0% 100% 1
6 BIOHEALTH INFORMAT 53476 0% 100% 1
7 BIOL 68 580 53476 0% 100% 1
8 COLUMBIA UNIV COMPUTAT BIOL BIOINFORMAT C2B 53476 0% 100% 1
9 COMPUTAC BIOL 53476 0% 100% 1
10 COMPUTAT BIOL INFECT GRP 53476 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NUCLEIC ACIDS RESEARCH 13823 18% 0% 101
2 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 8022 5% 0% 31
3 BIOINFORMATICS 6470 6% 0% 36
4 BMC BIOINFORMATICS 5161 5% 0% 27
5 GENOME BIOLOGY 5158 3% 1% 17
6 BRIEFINGS IN FUNCTIONAL GENOMICS 4275 1% 2% 5
7 WILEY INTERDISCIPLINARY REVIEWS-RNA 3633 1% 1% 5
8 RNA BIOLOGY 2844 1% 1% 7
9 PROTEOME SCIENCE 2399 1% 1% 5
10 COMPUTATIONAL BIOLOGY AND CHEMISTRY 2188 1% 1% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 INTERACTION PROPENSITY 320855 1% 100% 6 Search INTERACTION+PROPENSITY Search INTERACTION+PROPENSITY
2 PROTEIN RNA INTERACTIONS 181241 4% 17% 20 Search PROTEIN+RNA+INTERACTIONS Search PROTEIN+RNA+INTERACTIONS
3 DNA BINDING RESIDUES 160427 1% 100% 3 Search DNA+BINDING+RESIDUES Search DNA+BINDING+RESIDUES
4 RNA BINDING RESIDUES 160427 1% 100% 3 Search RNA+BINDING+RESIDUES Search RNA+BINDING+RESIDUES
5 CROSS LINKING AND IMMUNOPRECIPITATION 106952 0% 100% 2 Search CROSS+LINKING+AND+IMMUNOPRECIPITATION Search CROSS+LINKING+AND+IMMUNOPRECIPITATION
6 DIRECT AND INDIRECT READOUTS 106952 0% 100% 2 Search DIRECT+AND+INDIRECT+READOUTS Search DIRECT+AND+INDIRECT+READOUTS
7 DNA PROTEIN RECOGNITION MODULE 106952 0% 100% 2 Search DNA+PROTEIN+RECOGNITION+MODULE Search DNA+PROTEIN+RECOGNITION+MODULE
8 INTERACTOME CAPTURE 106952 0% 100% 2 Search INTERACTOME+CAPTURE Search INTERACTOME+CAPTURE
9 INTERFACE CLASS 106952 0% 100% 2 Search INTERFACE+CLASS Search INTERFACE+CLASS
10 PROTEIN RNA DOCKING 106952 0% 100% 2 Search PROTEIN+RNA+DOCKING Search PROTEIN+RNA+DOCKING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 YAN, J , FRIEDRICH, S , KURGAN, L , (2016) A COMPREHENSIVE COMPARATIVE REVIEW OF SEQUENCE-BASED PREDICTORS OF DNA- AND RNA-BINDING RESIDUES.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 88 -105 41 76% 6
2 MIAO, Z , WESTHOF, E , (2015) A LARGE-SCALE ASSESSMENT OF NUCLEIC ACIDS BINDING SITE PREDICTION PROGRAMS.PLOS COMPUTATIONAL BIOLOGY. VOL. 11. ISSUE 12. P. - 48 84% 5
3 MIAO, ZC , WESTHOF, E , (2015) PREDICTION OF NUCLEIC ACID BINDING PROBABILITY IN PROTEINS: A NEIGHBORING RESIDUE NETWORK BASED SCORE.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE 11. P. 5340 -5351 42 70% 8
4 YANG, XX , WANG, J , SUN, J , LIU, R , (2015) SNBRFINDER: A SEQUENCE-BASED HYBRID ALGORITHM FOR ENHANCED PREDICTION OF NUCLEIC ACID-BINDING RESIDUES.PLOS ONE. VOL. 10. ISSUE 7. P. - 43 73% 1
5 GROMIHA, MM , NAGARAJAN, R , (2013) COMPUTATIONAL APPROACHES FOR PREDICTING THE BINDING SITES AND UNDERSTANDING THE RECOGNITION MECHANISM OF PROTEIN-DNA COMPLEXES.PROTEIN-NUCLEIC ACIDS INTERACTIONS. VOL. 91. ISSUE . P. 65-99 55 55% 4
6 DEY, S , PAL, A , GUHAROY, M , SONAVANE, S , CHAKRABARTI, P , (2012) CHARACTERIZATION AND PREDICTION OF THE BINDING SITE IN DNA-BINDING PROTEINS: IMPROVEMENT OF ACCURACY BY COMBINING RESIDUE COMPOSITION, EVOLUTIONARY CONSERVATION AND STRUCTURAL PARAMETERS.NUCLEIC ACIDS RESEARCH. VOL. 40. ISSUE 15. P. 7150 -7161 39 75% 9
7 SI, JN , ZHAO, R , WU, RL , (2015) AN OVERVIEW OF THE PREDICTION OF PROTEIN DNA-BINDING SITES.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. VOL. 16. ISSUE 3. P. 5194 -5215 47 50% 5
8 XIONG, Y , XIA, JF , ZHANG, W , LIU, J , (2011) EXPLOITING A REDUCED SET OF WEIGHTED AVERAGE FEATURES TO IMPROVE PREDICTION OF DNA-BINDING RESIDUES FROM 3D STRUCTURES.PLOS ONE. VOL. 6. ISSUE 12. P. - 37 73% 6
9 BARIK, A , MISHRA, A , BAHADUR, RP , (2012) PRINCE: A WEB SERVER FOR STRUCTURAL AND PHYSICOCHEMICAL ANALYSIS OF PROTEIN-RNA INTERFACE.NUCLEIC ACIDS RESEARCH. VOL. 40. ISSUE W1. P. W440-W444 32 80% 4
10 YANG, XX , DENG, ZL , LIU, R , (2014) RBRDETECTOR: IMPROVED PREDICTION OF BINDING RESIDUES ON RNA-BINDING PROTEIN STRUCTURES USING COMPLEMENTARY FEATURE- AND TEMPLATE-BASED STRATEGIES.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 82. ISSUE 10. P. 2455 -2471 31 74% 6

Classes with closest relation at Level 1


Rank Class id link
1 6443 PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING
2 14197 ARTIFICIAL TRANSCRIPTION FACTOR//ZINC FINGER//RECOGNITION CODE
3 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
4 2741 PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST
5 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
6 3617 HUR//AU RICH ELEMENT//TRISTETRAPROLIN
7 27495 UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE
8 785 SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN
9 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
10 13709 HNRNP B1//HNRNP A2 B1//U1A

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