Class information for:
Level 3: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
219 50409 44.1 77%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
1067 2             ANGIOGENIN//RIBONUCLEASE//MOLTEN GLOBULE 9981
2636 2             COILED COIL//KRAB DOMAIN//PROTEIN DESIGN 3515

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS journal 577835 5% 39% 2473
2 PROTEIN FOLDING authKW 566772 5% 40% 2349
3 PROTEIN STRUCTURE PREDICTION authKW 319708 1% 79% 670
4 PROTEIN SCIENCE journal 165287 3% 21% 1316
5 BIOCHEMISTRY & MOLECULAR BIOLOGY WoSSC 156549 47% 1% 23639
6 PROTEIN DESIGN authKW 125687 1% 49% 429
7 BIOPHYSICS WoSSC 117610 18% 2% 9155
8 JOURNAL OF MOLECULAR BIOLOGY journal 108638 4% 9% 2071
9 MOLTEN GLOBULE authKW 87324 1% 51% 283
10 JOURNAL OF COMPUTATIONAL CHEMISTRY journal 86831 2% 15% 945

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 156549 47% 1% 23639
2 Biophysics 117610 18% 2% 9155
3 Mathematical & Computational Biology 73721 7% 4% 3668
4 Biochemical Research Methods 36056 10% 2% 4901
5 Physics, Atomic, Molecular & Chemical 22830 10% 1% 4818
6 Chemistry, Physical 20138 16% 1% 8077
7 Biotechnology & Applied Microbiology 11739 8% 1% 3968
8 Computer Science, Interdisciplinary Applications 10544 5% 1% 2281
9 Chemistry, Multidisciplinary 3871 9% 0% 4436
10 Physics, Mathematical 2536 3% 1% 1358

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BAKER CHEM CHEM BIOL 70352 0% 63% 184
2 COMPUTAT BIOL BIOINFORMAT 55034 1% 25% 368
3 BIOL RUMENTAT 54323 0% 46% 195
4 SACKLER MOL MED 37321 0% 42% 147
5 BIOINFORMAT 36558 2% 7% 935
6 THEORET BIOL PHYS 29286 0% 24% 207
7 CHIM BIOPHYS 27716 0% 46% 100
8 ENGN PROT 24804 0% 96% 43
9 CUBIC 21534 0% 71% 50
10 EXPT COMPUTAT BIOL 20950 0% 32% 109

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 577835 5% 39% 2473
2 PROTEIN SCIENCE 165287 3% 21% 1316
3 JOURNAL OF MOLECULAR BIOLOGY 108638 4% 9% 2071
4 JOURNAL OF COMPUTATIONAL CHEMISTRY 86831 2% 15% 945
5 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 78951 2% 17% 780
6 BIOINFORMATICS 77533 2% 11% 1182
7 PROTEIN ENGINEERING 76612 1% 24% 538
8 FOLDING & DESIGN 52375 0% 70% 124
9 BMC BIOINFORMATICS 44330 1% 10% 752
10 BIOCHEMISTRY 41572 4% 4% 1980

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class		 LCSH search Wikipedia search
1 PROTEIN FOLDING 566772 5% 40% 2349 Search PROTEIN+FOLDING Search PROTEIN+FOLDING
2 PROTEIN STRUCTURE PREDICTION 319708 1% 79% 670 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
3 PROTEIN DESIGN 125687 1% 49% 429 Search PROTEIN+DESIGN Search PROTEIN+DESIGN
4 MOLTEN GLOBULE 87324 1% 51% 283 Search MOLTEN+GLOBULE Search MOLTEN+GLOBULE
5 PROTEIN STABILITY 85928 1% 24% 596 Search PROTEIN+STABILITY Search PROTEIN+STABILITY
6 STRUCTURE PREDICTION 85577 1% 45% 319 Search STRUCTURE+PREDICTION Search STRUCTURE+PREDICTION
7 PROTEIN STRUCTURE 79136 1% 19% 710 Search PROTEIN+STRUCTURE Search PROTEIN+STRUCTURE
8 ANGIOGENIN 79035 0% 66% 199 Search ANGIOGENIN Search ANGIOGENIN
9 PSEUDO AMINO ACID COMPOSITION 75485 0% 98% 127 Search PSEUDO+AMINO+ACID+COMPOSITION Search PSEUDO+AMINO+ACID+COMPOSITION
10 FOLD RECOGNITION 66894 0% 70% 158 Search FOLD+RECOGNITION Search FOLD+RECOGNITION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CHOU, KC , (2015) IMPACTS OF BIOINFORMATICS TO MEDICINAL CHEMISTRY.MEDICINAL CHEMISTRY. VOL. 11. ISSUE 3. P. 218 -234 219 89% 81
2 CHOU, KC , (2011) SOME REMARKS ON PROTEIN ATTRIBUTE PREDICTION AND PSEUDO AMINO ACID COMPOSITION.JOURNAL OF THEORETICAL BIOLOGY. VOL. 273. ISSUE 1. P. 236 -247 177 90% 446
3 MAXIMOVA, T , MOFFATT, R , MA, BY , NUSSINOV, R , SHEHU, A , (2016) PRINCIPLES AND OVERVIEW OF SAMPLING METHODS FOR MODELING MACROMOLECULAR STRUCTURE AND DYNAMICS.PLOS COMPUTATIONAL BIOLOGY. VOL. 12. ISSUE 4. P. - 358 63% 4
4 KMIECIK, S , GRONT, D , KOLINSKI, M , WIETESKA, L , DAWID, AE , KOLINSKI, A , (2016) COARSE-GRAINED PROTEIN MODELS AND THEIR APPLICATIONS.CHEMICAL REVIEWS. VOL. 116. ISSUE 14. P. 7898 -7936 320 58% 7
5 CHEN, W , LIN, H , CHOU, KC , (2015) PSEUDO NUCLEOTIDE COMPOSITION OR PSEKNC: AN EFFECTIVE FORMULATION FOR ANALYZING GENOMIC SEQUENCES.MOLECULAR BIOSYSTEMS. VOL. 11. ISSUE 10. P. 2620 -2634 173 93% 28
6 ARAI, M , KUWAJIMA, K , (2000) ROLE OF THE MOLTEN GLOBULE STATE IN PROTEIN FOLDING.ADVANCES IN PROTEIN CHEMISTRY, VOL 53. VOL. 53. ISSUE . P. 209 -282 294 79% 320
7 DILL, KA , BROMBERG, S , YUE, KZ , FIEBIG, KM , YEE, DP , THOMAS, PD , CHAN, HS , (1995) PRINCIPLES OF PROTEIN-FOLDING - A PERSPECTIVE FROM SIMPLE EXACT MODELS.PROTEIN SCIENCE. VOL. 4. ISSUE 4. P. 561 -602 221 80% 1112
8 VAN DER LEE, R , BULJAN, M , LANG, B , WEATHERITT, RJ , DAUGHDRILL, GW , DUNKER, AK , FUXREITER, M , GOUGH, J , GSPONER, J , JONES, DT , ET AL (2014) CLASSIFICATION OF INTRINSICALLY DISORDERED REGIONS AND PROTEINS.CHEMICAL REVIEWS. VOL. 114. ISSUE 13. P. 6589 -6631 210 55% 134
9 DILL, KA , OZKAN, SB , SHELL, MS , WEIKL, TR , (2008) THE PROTEIN FOLDING PROBLEM.ANNUAL REVIEW OF BIOPHYSICS. VOL. 37. ISSUE . P. 289 -316 179 81% 392
10 SHAKHNOVICH, E , (2006) PROTEIN FOLDING THERMODYNAMICS AND DYNAMICS: WHERE PHYSICS, CHEMISTRY, AND BIOLOGY MEET.CHEMICAL REVIEWS. VOL. 106. ISSUE 5. P. 1559-1588 214 90% 208

Classes with closest relation at Level 3


Rank Class id link
1 90 MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS
2 430 JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES//JOURNAL OF CHEMICAL INFORMATION AND MODELING//QSAR
3 534 PYRIMIDINOPHANES//SOLID PHASE SYNTHESIS//INTERNATIONAL JOURNAL OF PEPTIDE AND PROTEIN RESEARCH
4 478 PHAGE DISPLAY//CELL FREE PROTEIN SYNTHESIS//ANTIBODY ENGINEERING
5 278 CORYNEBACTERIUM GLUTAMICUM//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY//BIOCHEMISTRY & MOLECULAR BIOLOGY
6 469 CHEMISTRY AND PHYSICS OF LIPIDS//BIOPHYSICAL JOURNAL//LIPID BILAYER
7 651 GOSSYPOL//3 MCPD//VORONOI DIAGRAM
8 434 GLASS TRANSITION//JOURNAL OF CHEMICAL PHYSICS//PHYSICS, ATOMIC, MOLECULAR & CHEMICAL
9 291 JOURNAL OF CHEMICAL PHYSICS//CHEMISTRY, PHYSICAL//MOLECULAR PHYSICS
10 189 JOURNAL OF MAGNETIC RESONANCE//MAGNETIC RESONANCE IN MEDICINE//JOURNAL OF BIOMOLECULAR NMR

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