Class information for:
Level 3: MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS

Basic class information

Class id #P Avg. number of
references
Database coverage
of references
90 77178 37.7 78%



Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.



Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
548 2             BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS 14655
868 2             BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS 11572
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
1714 2             MOLECULAR BEACON//MUTATION DETECTION//SEQUENCING BY HYBRIDIZATION 6662
2179 2             REFERENCE GENES//GENORM//NORMFINDER 4941
2924 2             SAGE//SERIAL ANALYSIS OF GENE EXPRESSION//DIFFERENTIAL DISPLAY 2737
3201 2             GRAPHICAL REPRESENTATION//AUTHORSHIP ATTRIBUTION//CODE CLONE 2089
3958 2             COMPUTER APPLICATIONS IN THE BIOSCIENCES//ADAPTIVE WEIGHTED LEAST SQUARES//AMBIGRAM 751

Terms with highest relevance score



rank Term termType Chi square Shr. of publ. in
class containing
term
Class's shr. of
term's tot. occurrences
#P with term
in class
1 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 1009251 21% 16% 15979
2 BIOINFORMATICS journal 874828 6% 45% 4776
3 BMC BIOINFORMATICS journal 540289 4% 42% 3154
4 AUTHORSHIP ATTRIBUTION authKW 331706 1% 86% 36
5 BIOCHEMICAL RESEARCH METHODS WoSSC 323659 22% 5% 16685
6 BIOTECHNOLOGY & APPLIED MICROBIOLOGY WoSSC 249404 25% 4% 18765
7 CODE CLONE authKW 194037 1% 95% 19
8 BMC SYSTEMS BIOLOGY journal 183561 1% 53% 850
9 GENETICS & HEREDITY WoSSC 175860 21% 3% 15660
10 REFERENCE GENES authKW 171577 1% 81% 519

Web of Science journal categories



Rank Term Chi square Shr. of publ. in
class containing
term
Class's shr. of
term's tot. occurrences
#P with term
in class
1 Mathematical & Computational Biology 1009251 21% 16% 15979
2 Biochemical Research Methods 323659 22% 5% 16685
3 Biotechnology & Applied Microbiology 249404 25% 4% 18765
4 Genetics & Heredity 175860 21% 3% 15660
5 Biochemistry & Molecular Biology 68287 28% 1% 20829
6 Evolutionary Biology 56613 6% 3% 4551
7 Biology 15706 5% 2% 3561
8 Computer Science, Interdisciplinary Applications 14340 4% 2% 3251
9 Statistics & Probability 9230 3% 1% 2416
10 Cell Biology 3608 6% 1% 4254

Address terms



Rank Term Chi square Shr. of publ. in
class containing
term
Class's shr. of
term's tot. occurrences
#P with term
in class
1 BIOINFORMAT 134827 3% 16% 2161
2 COMP SCI 62456 7% 3% 5101
3 BIOTECHNOL INFORMAT 58440 1% 26% 560
4 BIOL DATA MANAGEMENT TECHNOL 49399 0% 70% 174
5 POLISH LANGUAGE 44790 0% 83% 5
6 DATA MIN INFORMAT GRP 43000 0% 100% 4
7 SYST BIOL 37792 1% 11% 903
8 CLIPS COMPUTAT LINGUIST GRP 33590 0% 63% 5
9 INTERNET COMMERCE SECUR 33590 0% 63% 5
10 COMPUTAT BIOL 33082 1% 15% 568

Journals



Rank Term Chi square Shr. of publ. in
class containing
term
Class's shr. of
term's tot. occurrences
#P with term
in class
1 BIOINFORMATICS 874828 6% 45% 4776
2 BMC BIOINFORMATICS 540289 4% 42% 3154
3 BMC SYSTEMS BIOLOGY 183561 1% 53% 850
4 JOURNAL OF COMPUTATIONAL BIOLOGY 160595 1% 50% 784
5 NUCLEIC ACIDS RESEARCH 155899 5% 10% 3937
6 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 106098 1% 48% 543
7 BIOTECHFORUM ( BTF ) 103021 1% 31% 811
8 MOLECULAR BIOLOGY AND EVOLUTION 102697 2% 21% 1192
9 BMC GENOMICS 98641 2% 16% 1535
10 GENOME BIOLOGY 84757 1% 27% 791

Author Key Words



Rank Term Chi square Shr. of publ. in
class containing
term
Class's shr. of
term's tot. occurrences
#P with
term in
class
LCSH search Wikipedia search
1 AUTHORSHIP ATTRIBUTION 331706 1% 86% 36 Search AUTHORSHIP+ATTRIBUTION Search AUTHORSHIP+ATTRIBUTION
2 CODE CLONE 194037 1% 95% 19 Search CODE+CLONE Search CODE+CLONE
3 REFERENCE GENES 171577 1% 81% 519 Search REFERENCE+GENES Search REFERENCE+GENES
4 STYLOMETRY 165139 1% 59% 26 Search STYLOMETRY Search STYLOMETRY
5 SOFTWARE BIRTHMARK 150501 0% 100% 14 Search SOFTWARE+BIRTHMARK Search SOFTWARE+BIRTHMARK
6 CLOSEST STRING PROBLEM 129001 0% 100% 12 Search CLOSEST+STRING+PROBLEM Search CLOSEST+STRING+PROBLEM
7 ALIGNMENT FREE METHOD 113543 0% 81% 13 Search ALIGNMENT+FREE+METHOD Search ALIGNMENT+FREE+METHOD
8 SYSTEMS BIOLOGY 107208 1% 28% 964 Search SYSTEMS+BIOLOGY Search SYSTEMS+BIOLOGY
9 NUMERICAL CHARACTERIZATION 87780 0% 58% 14 Search NUMERICAL+CHARACTERIZATION Search NUMERICAL+CHARACTERIZATION
10 SIMILARITIES DISSIMILARITIES 86000 0% 100% 8 Search SIMILARITIES+DISSIMILARITIES Search SIMILARITIES+DISSIMILARITIES

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.



Rank Reference # ref. in
cl.
Shr. of ref. in
cl.
Citations
1 CSERMELY, P , KORCSMAROS, T , KISS, HJM , LONDON, G , NUSSINOV, R , (2013) STRUCTURE AND DYNAMICS OF MOLECULAR NETWORKS: A NOVEL PARADIGM OF DRUG DISCOVERY A COMPREHENSIVE REVIEW.PHARMACOLOGY & THERAPEUTICS. VOL. 138. ISSUE 3. P. 333 -408 570 52% 205
2 ALTSCHUL, SF , MADDEN, TL , SCHAFFER, AA , ZHANG, JH , ZHANG, Z , MILLER, W , LIPMAN, DJ , (1997) GAPPED BLAST AND PSI-BLAST: A NEW GENERATION OF PROTEIN DATABASE SEARCH PROGRAMS.NUCLEIC ACIDS RESEARCH. VOL. 25. ISSUE 17. P. 3389-3402 43 70% 41839
3 CONESA, A , MADRIGAL, P , TARAZONA, S , GOMEZ-CABRERO, D , CERVERA, A , MCPHERSON, A , SZCZESNIAK, MW , GAFFNEY, DJ , ELO, LL , ZHANG, XG , ET AL (2016) A SURVEY OF BEST PRACTICES FOR RNA-SEQ DATA ANALYSIS.GENOME BIOLOGY. VOL. 17. ISSUE . P. - 136 70% 23
4 LEWIS, NE , NAGARAJAN, H , PALSSON, BO , (2012) CONSTRAINING THE METABOLIC GENOTYPE-PHENOTYPE RELATIONSHIP USING A PHYLOGENY OF IN SILICO METHODS.NATURE REVIEWS MICROBIOLOGY. VOL. 10. ISSUE 4. P. 291 -305 126 90% 205
5 PAVLOPOULOS, GA , MALLIARAKIS, D , PAPANIKOLAOU, N , THEODOSIOU, T , ENRIGHT, AJ , ILIOPOULOS, I , (2015) VISUALIZING GENOME AND SYSTEMS BIOLOGY: TECHNOLOGIES, TOOLS, IMPLEMENTATION TECHNIQUES AND TRENDS, PAST, PRESENT AND FUTURE.GIGASCIENCE. VOL. 4. ISSUE . P. - 208 82% 3
6 BARABASI, AL , GULBAHCE, N , LOSCALZO, J , (2011) NETWORK MEDICINE: A NETWORK-BASED APPROACH TO HUMAN DISEASE.NATURE REVIEWS GENETICS. VOL. 12. ISSUE 1. P. 56 -68 82 70% 1018
7 RITCHIE, ME , PHIPSON, B , WU, D , HU, YF , LAW, CW , SHI, W , SMYTH, GK , (2015) LIMMA POWERS DIFFERENTIAL EXPRESSION ANALYSES FOR RNA-SEQUENCING AND MICROARRAY STUDIES.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE 7. P. - 45 67% 582
8 MORRISON, DA , (2006) PHYLOGENETIC ANALYSES OF PARASITES IN THE NEW MILLENNIUM.ADVANCES IN PARASITOLOGY, VOL 63. VOL. 63. ISSUE . P. 1 -124 246 73% 7
9 LAEHNEMANN, D , BORKHARDT, A , MCHARDY, AC , (2016) DENOISING DNA DEEP SEQUENCING DATA-HIGH-THROUGHPUT SEQUENCING ERRORS AND THEIR CORRECTION.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 154 -179 80 92% 16
10 MITRA, K , CARVUNIS, AR , RAMESH, SK , IDEKER, T , (2013) INTEGRATIVE APPROACHES FOR FINDING MODULAR STRUCTURE IN BIOLOGICAL NETWORKS.NATURE REVIEWS GENETICS. VOL. 14. ISSUE 10. P. 719 -732 122 78% 109

Classes with closest relation at Level 3



Rank Class id link
1 445 COMPLEX NETWORKS//PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS//ECONOPHYSICS
2 219 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION
3 447 TCTP//TRANSLATIONALLY CONTROLLED TUMOR PROTEIN//GENETIC EPIDEMIOLOGY
4 669 EXPERIMENTAL EVOLUTION//EVOLUTIONARY BIOLOGY//EVOLUTION
5 430 JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES//JOURNAL OF CHEMICAL INFORMATION AND MODELING//QSAR
6 677 DNA BARCODING//SPECIES IDENTIFICATION//GMO
7 211 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE//IEEE TRANSACTIONS ON NEURAL NETWORKS//DATA MINING
8 71 GENETICS & HEREDITY//CHROMATIN//CELL BIOLOGY
9 594 ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES//UV B RADIATION//ORIGIN OF LIFE
10 183 APTAMER//G QUADRUPLEX//RIBOZYME

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