Class information for:
Level 2: BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
548 14655 40.6 72%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
548 2             BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS 14655
1585 1                   CHEMICAL MASTER EQUATION//STOCHASTIC GENE EXPRESSION//TAU LEAPING 2582
2029 1                   FLUX BALANCE ANALYSIS//METABOLIC NETWORK//CONSTRAINT BASED MODELING 2381
5632 1                   BOOLEAN NETWORKS//SEMI TENSOR PRODUCT//BOOLEAN CONTROL NETWORK 1595
6275 1                   GENE REGULATORY NETWORK//NETWORK INFERENCE//REVERSE ENGINEERING 1505
7960 1                   SYNTHETIC BIOLOGY//ACS SYNTHETIC BIOLOGY//GENETIC CIRCUITS 1308
8123 1                   METABOLIC CONTROL ANALYSIS//BIOCHEMICAL SYSTEMS THEORY//S SYSTEM 1290
8965 1                   CHEMICAL REACTION NETWORKS//MASS ACTION KINETICS//ULTRASENSITIVITY 1200
12004 1                   STRUCTURAL IDENTIFIABILITY//IDENTIFIABILITY//MODEL DISCRIMINATION 938
15220 1                   CELLML//SBML//AUCKLAND BIOENGN 725
21530 1                   NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC 415
22276 1                   SIGNALING SYST//INTRACELLULAR DYNAMIC//NF KAPPA B SIGNAL TRANSDUCTION NETWORK 388
23966 1                   GENETIC REGULATORY NETWORKS//GENETIC REGULATORY NETWORKS GRNS//DISCRETE TIME GENETIC REGULATORY NETWORK 328

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 BMC SYSTEMS BIOLOGY journal 408221 4% 35% 561
2 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 365960 29% 4% 4255
3 BOOLEAN NETWORKS authKW 315713 1% 79% 192
4 GENE REGULATORY NETWORK authKW 307850 2% 41% 361
5 GENETIC REGULATORY NETWORKS authKW 273841 1% 82% 161
6 SYSTEMS BIOLOGY authKW 256588 4% 19% 658
7 FLUX BALANCE ANALYSIS authKW 252478 1% 66% 184
8 METABOLIC NETWORK authKW 236047 2% 50% 226
9 SYNTHETIC BIOLOGY authKW 198757 3% 25% 387
10 METABOLIC CONTROL ANALYSIS authKW 128568 1% 48% 128

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Mathematical & Computational Biology 365960 29% 4% 4255
2 Biochemical Research Methods 39986 18% 1% 2636
3 Biotechnology & Applied Microbiology 26178 19% 1% 2765
4 Biology 17220 10% 1% 1503
5 Biochemistry & Molecular Biology 6598 21% 0% 3117
6 Physics, Mathematical 3143 5% 0% 698
7 Computer Science, Interdisciplinary Applications 2652 4% 0% 624
8 Cell Biology 2434 9% 0% 1259
9 Biophysics 2059 5% 0% 789
10 Automation & Control Systems 1690 3% 0% 383

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOSYST SCI ENGN 53404 1% 19% 136
2 MANCHESTER INTEGRAT SYST BIOL 48954 0% 33% 72
3 SYST BIOL 37821 3% 5% 396
4 BIOSYST DYNAM 34243 0% 69% 24
5 CONTROL SYST BIOL 33963 0% 47% 35
6 COMPUTAT SYST BIOL GRP 25443 0% 28% 44
7 COMPUTAT SYST BIOTECHNOL 24793 0% 57% 21
8 BIOCOMPLEX INFORMAT 24389 0% 25% 47
9 CELL DECIS PROC 23485 0% 47% 24
10 SYST BIOL BIOINFORMAT GRP 22322 0% 38% 28

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC SYSTEMS BIOLOGY 408221 4% 35% 561
2 IET SYSTEMS BIOLOGY 122731 1% 42% 140
3 BIOINFORMATICS 108543 5% 7% 748
4 MOLECULAR SYSTEMS BIOLOGY 78381 1% 22% 169
5 ACS SYNTHETIC BIOLOGY 67907 1% 24% 135
6 IEE PROCEEDINGS SYSTEMS BIOLOGY 62660 0% 60% 50
7 PLOS COMPUTATIONAL BIOLOGY 56881 2% 8% 357
8 BMC BIOINFORMATICS 38655 3% 5% 376
9 JOURNAL OF THEORETICAL BIOLOGY 34221 3% 4% 425
10 BIOSYSTEMS 32338 1% 8% 206

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 BOOLEAN NETWORKS 315713 1% 79% 192 Search BOOLEAN+NETWORKS Search BOOLEAN+NETWORKS
2 GENE REGULATORY NETWORK 307850 2% 41% 361 Search GENE+REGULATORY+NETWORK Search GENE+REGULATORY+NETWORK
3 GENETIC REGULATORY NETWORKS 273841 1% 82% 161 Search GENETIC+REGULATORY+NETWORKS Search GENETIC+REGULATORY+NETWORKS
4 SYSTEMS BIOLOGY 256588 4% 19% 658 Search SYSTEMS+BIOLOGY Search SYSTEMS+BIOLOGY
5 FLUX BALANCE ANALYSIS 252478 1% 66% 184 Search FLUX+BALANCE+ANALYSIS Search FLUX+BALANCE+ANALYSIS
6 METABOLIC NETWORK 236047 2% 50% 226 Search METABOLIC+NETWORK Search METABOLIC+NETWORK
7 SYNTHETIC BIOLOGY 198757 3% 25% 387 Search SYNTHETIC+BIOLOGY Search SYNTHETIC+BIOLOGY
8 METABOLIC CONTROL ANALYSIS 128568 1% 48% 128 Search METABOLIC+CONTROL+ANALYSIS Search METABOLIC+CONTROL+ANALYSIS
9 SEMI TENSOR PRODUCT 115205 0% 86% 64 Search SEMI+TENSOR+PRODUCT Search SEMI+TENSOR+PRODUCT
10 CONSTRAINT BASED MODELING 105956 0% 72% 71 Search CONSTRAINT+BASED+MODELING Search CONSTRAINT+BASED+MODELING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 LEWIS, NE , NAGARAJAN, H , PALSSON, BO , (2012) CONSTRAINING THE METABOLIC GENOTYPE-PHENOTYPE RELATIONSHIP USING A PHYLOGENY OF IN SILICO METHODS.NATURE REVIEWS MICROBIOLOGY. VOL. 10. ISSUE 4. P. 291 -305 125 89% 205
2 GOUTSIAS, J , JENKINSON, G , (2013) MARKOVIAN DYNAMICS ON COMPLEX REACTION NETWORKS.PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS. VOL. 529. ISSUE 2. P. 199 -264 169 64% 30
3 BROPHY, JAN , VOIGT, CA , (2014) PRINCIPLES OF GENETIC CIRCUIT DESIGN.NATURE METHODS. VOL. 11. ISSUE 5. P. 508-520 117 54% 114
4 SANCHEZ-OSORIO, I , RAMOS, F , MAYORGA, P , DANTAN, E , (2014) FOUNDATIONS FOR MODELING THE DYNAMICS OF GENE REGULATORY NETWORKS: A MULTILEVEL-PERSPECTIVE REVIEW.JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. VOL. 12. ISSUE 1. P. - 187 58% 1
5 O'BRIEN, EJ , MONK, JM , PALSSON, BO , (2015) USING GENOME-SCALE MODELS TO PREDICT BIOLOGICAL CAPABILITIES.CELL. VOL. 161. ISSUE 5. P. 971 -987 79 90% 33
6 BORDBAR, A , MONK, JM , KING, ZA , PALSSON, BO , (2014) CONSTRAINT-BASED MODELS PREDICT METABOLIC AND ASSOCIATED CELLULAR FUNCTIONS.NATURE REVIEWS GENETICS. VOL. 15. ISSUE 2. P. 107-120 79 77% 111
7 NIELSEN, AAK , DER, BS , SHIN, J , VAIDYANATHAN, P , PARALANOV, V , STRYCHALSKI, EA , ROSS, D , DENSMORE, D , VOIGT, CA , (2016) GENETIC CIRCUIT DESIGN AUTOMATION.SCIENCE. VOL. 352. ISSUE 6281. P. - 64 78% 20
8 BOURGUIGNON, PY , SCHACHTER, V , DUROT, M , (2009) GENOME-SCALE MODELS OF BACTERIAL METABOLISM: RECONSTRUCTION AND APPLICATIONS.FEMS MICROBIOLOGY REVIEWS. VOL. 33. ISSUE 1. P. 164 -190 137 69% 119
9 MAIA, P , ROCHA, M , ROCHA, I , (2016) IN SILICO CONSTRAINT-BASED STRAIN OPTIMIZATION METHODS: THE QUEST FOR OPTIMAL CELL FACTORIES.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 80. ISSUE 1. P. 45 -67 117 76% 2
10 COSTA, RS , HARTMANN, A , VINGA, S , (2016) KINETIC MODELING OF CELL METABOLISM FOR MICROBIAL PRODUCTION.JOURNAL OF BIOTECHNOLOGY. VOL. 219. ISSUE . P. 126 -141 121 71% 2

Classes with closest relation at Level 2


Rank Class id link
1 868 BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS
2 3653 BETA N ACETYL D GLUCOSAMINIDASE//RAPID EQUILIBRIUM//UNSTABLE PRODUCT
3 1485 METABOLOMICS//METABONOMICS//METABOLIC PROFILING
4 1304 CLOSTRIDIUM ACETOBUTYLICUM//1 3 PROPANEDIOL//2 3 BUTANEDIOL
5 4185 MOLECULAR COMMUNICATION//NANONETWORKS//NANO COMMUNICATION NETWORKS
6 1187 EXPERIMENTAL EVOLUTION//EVOLUTIONARY BIOLOGY//EVOLUTION
7 225 YEAST//SACCHAROMYCES CEREVISIAE//SCHIZOSACCHAROMYCES POMBE
8 126 MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY
9 3516 CYTOSOLIC NADH OXIDATION//EXOGENOUS NADH//3 CAPACITOR MODEL
10 804 JOURNAL OF BACTERIOLOGY//PHOSPHOTRANSFERASE SYSTEM//PERIPLASMIC BINDING PROTEIN

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