Class information for:
Level 1: MICROCIN//LASSO PEPTIDES//MICROCIN J25

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
20232 470 36.1 80%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
354 3       MICROCYSTIN//HARMFUL ALGAE//MICROCYSTIN LR 34996
1803 2             LANTIBIOTIC//OXAZOLE//DOLASTATIN 10 6283
20232 1                   MICROCIN//LASSO PEPTIDES//MICROCIN J25 470

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MICROCIN authKW 1334880 7% 62% 33
2 LASSO PEPTIDES authKW 1321840 5% 88% 23
3 MICROCIN J25 authKW 978337 3% 94% 16
4 CYANOBACTINS authKW 668237 3% 86% 12
5 MICROCIN B17 authKW 478396 2% 82% 9
6 BIOQUIM NUTR address 382924 6% 21% 28
7 PATELLAMIDES authKW 324839 1% 100% 5
8 MICROCIN E492 authKW 292352 1% 75% 6
9 SECC FISIOL GENET BACTERIANAS address 289397 1% 64% 7
10 BOTTROMYCIN authKW 259871 1% 100% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Microbiology 3466 36% 0% 170
2 Biochemistry & Molecular Biology 989 40% 0% 186
3 Chemistry, Medicinal 261 8% 0% 36
4 Biotechnology & Applied Microbiology 159 9% 0% 43
5 Chemistry, Multidisciplinary 128 13% 0% 63
6 Biophysics 102 6% 0% 30
7 Pharmacology & Pharmacy 72 10% 0% 46
8 Chemistry, Organic 38 6% 0% 27
9 Biochemical Research Methods 17 3% 0% 14
10 Genetics & Heredity 10 3% 0% 16

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOQUIM NUTR 382924 6% 21% 28
2 SECC FISIOL GENET BACTERIANAS 289397 1% 64% 7
3 COMMUN MOL AD TAT MICROORGANISMS 259871 1% 100% 4
4 SUPER INVEST BIOL 176857 4% 15% 18
5 MARINE BIODISCOVERY 141894 3% 15% 15
6 CNRSUMR 6014IFRMP 23 129936 0% 100% 2
7 CONICET QUIM BIOL DR BERNABE BLOJ 129936 0% 100% 2
8 ECOBS 129936 0% 100% 2
9 INSIBIO 97927 3% 11% 14
10 REGULAT DEV MOL ERS 90226 1% 28% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BACTERIOLOGY 6565 12% 0% 58
2 CHEMISTRY & BIOLOGY 5468 3% 1% 15
3 ACS CHEMICAL BIOLOGY 5090 3% 1% 13
4 NATURE CHEMICAL BIOLOGY 3021 2% 1% 8
5 CHEMBIOCHEM 2845 3% 0% 14
6 JOURNAL OF ANTIBIOTICS 2177 3% 0% 15
7 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 1183 4% 0% 21
8 FEMS MICROBIOLOGY LETTERS 900 3% 0% 15
9 CURRENT OPINION IN CHEMICAL BIOLOGY 855 1% 0% 5
10 GENETIKA 524 1% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 MICROCIN 1334880 7% 62% 33 Search MICROCIN Search MICROCIN
2 LASSO PEPTIDES 1321840 5% 88% 23 Search LASSO+PEPTIDES Search LASSO+PEPTIDES
3 MICROCIN J25 978337 3% 94% 16 Search MICROCIN+J25 Search MICROCIN+J25
4 CYANOBACTINS 668237 3% 86% 12 Search CYANOBACTINS Search CYANOBACTINS
5 MICROCIN B17 478396 2% 82% 9 Search MICROCIN+B17 Search MICROCIN+B17
6 PATELLAMIDES 324839 1% 100% 5 Search PATELLAMIDES Search PATELLAMIDES
7 MICROCIN E492 292352 1% 75% 6 Search MICROCIN+E492 Search MICROCIN+E492
8 BOTTROMYCIN 259871 1% 100% 4 Search BOTTROMYCIN Search BOTTROMYCIN
9 IRON SIDEROPHORE RECEPTORS 194904 1% 100% 3 Search IRON+SIDEROPHORE+RECEPTORS Search IRON+SIDEROPHORE+RECEPTORS
10 LASSO STRUCTURE 194904 1% 100% 3 Search LASSO+STRUCTURE Search LASSO+STRUCTURE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 HEGEMANN, JD , ZIMMERMANN, M , XIE, XL , MARAHIEL, MA , (2015) LASSO PEPTIDES: AN INTRIGUING CLASS OF BACTERIAL NATURAL PRODUCTS.ACCOUNTS OF CHEMICAL RESEARCH. VOL. 48. ISSUE 7. P. 1909 -1919 51 91% 20
2 DUQUESNE, S , DESTOUMIEUX-GARZON, D , PEDUZZI, J , REBUFFAT, S , (2007) MICROCINS, GENE-ENCODED ANTIBACTERIAL PEPTIDES FROM ENTEROBACTERIA.NATURAL PRODUCT REPORTS. VOL. 24. ISSUE 4. P. 708 -734 116 49% 102
3 MAKSIMOV, MO , PAN, SJ , LINK, AJ , (2012) LASSO PEPTIDES: STRUCTURE, FUNCTION, BIOSYNTHESIS, AND ENGINEERING.NATURAL PRODUCT REPORTS. VOL. 29. ISSUE 9. P. 996 -1006 62 75% 37
4 ZHAO, N , PAN, YX , CHENG, Z , LIU, HG , (2016) LASSO PEPTIDE, A HIGHLY STABLE STRUCTURE AND DESIGNABLE MULTIFUNCTIONAL BACKBONE.AMINO ACIDS. VOL. 48. ISSUE 6. P. 1347 -1356 55 81% 1
5 SEVERINOV, K , SEMENOVA, E , KAZAKOV, A , KAZAKOV, T , GELFAND, MS , (2007) LOW-MOLECULAR-WEIGHT POST-TRANSLATIONALLY MODIFIED MICROCINS.MOLECULAR MICROBIOLOGY. VOL. 65. ISSUE 6. P. 1380-1394 55 76% 52
6 XIE, XL , MARAHIEL, MA , (2012) NMR AS AN EFFECTIVE TOOL FOR THE STRUCTURE DETERMINATION OF LASSO PEPTIDES.CHEMBIOCHEM. VOL. 13. ISSUE 5. P. 621-625 48 80% 9
7 PAN, SJ , LINK, AJ , (2011) SEQUENCE DIVERSITY IN THE LASSO PEPTIDE FRAMEWORK: DISCOVERY OF FUNCTIONAL MICROCIN J25 VARIANTS WITH MULTIPLE AMINO ACID SUBSTITUTIONS.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 133. ISSUE 13. P. 5016 -5023 36 95% 29
8 REBUFFAT, S , (2012) MICROCINS IN ACTION: AMAZING DEFENCE STRATEGIES OF ENTEROBACTERIA.BIOCHEMICAL SOCIETY TRANSACTIONS. VOL. 40. ISSUE . P. 1456-1462 36 92% 20
9 HEGEMANN, JD , ZIMMERMANN, M , ZHU, SZ , KLUG, D , MARAHIEL, MA , (2013) LASSO PEPTIDES FROM PROTEOBACTERIA: GENOME MINING EMPLOYING HETEROLOGOUS EXPRESSION AND MASS SPECTROMETRY.BIOPOLYMERS. VOL. 100. ISSUE 5. P. 527-542 37 82% 23
10 MAKSIMOV, MO , PELCZER, I , LINK, AJ , (2012) PRECURSOR-CENTRIC GENOME-MINING APPROACH FOR LASSO PEPTIDE DISCOVERY.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 109. ISSUE 38. P. 15223-15228 36 78% 32

Classes with closest relation at Level 1


Rank Class id link
1 20833 THIOPEPTIDES//NOSIHEPTIDE//NOCATHIACIN
2 8681 LANTIBIOTIC//NISIN//LANTHIONINE
3 13101 2 IMIDAZOLINE//THIAZOLINE//OXAZOLINE
4 32729 ONCOCIN//APIDAECIN//PROLINE RICH ANTIMICROBIAL PEPTIDES
5 8298 COLICIN//COLICIN E1//PYOCIN
6 8321 MARINE CYANOBACTERIA//AERUGINOSIN//LYNGBYA MAJUSCULA
7 13486 RPOS//CURLI//UVI31
8 16343 CYCLOTIDES//KALATA B1//CIRCULAR PROTEINS
9 18977 CHLOROPHYLL D//ACARYOCHLORIS MARINA//ISIA
10 16004 BETA ROLL//ESCHERICHIA COLI HEMOLYSIN//RTX TOXIN

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