Class information for:
Level 1: UDP SUGAR HYDROLASE//SUGAR PHOSPHATASES//HAD SUPERFAMILY

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
23719 337 32.4 64%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
278 3       CORYNEBACTERIUM GLUTAMICUM//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY//BIOCHEMISTRY & MOLECULAR BIOLOGY 43163
2061 2             GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE//PHOSPHOFRUCTOKINASE//PHOSPHOGLYCERATE MUTASE 5293
23719 1                   UDP SUGAR HYDROLASE//SUGAR PHOSPHATASES//HAD SUPERFAMILY 337

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 UDP SUGAR HYDROLASE authKW 465986 2% 86% 6
2 SUGAR PHOSPHATASES authKW 362435 1% 100% 4
3 HAD SUPERFAMILY authKW 305199 2% 42% 8
4 CLASS B PHOSPHATASE authKW 271826 1% 100% 3
5 CLASS C ACID PHOSPHATASE authKW 271826 1% 100% 3
6 MAB 1D7 authKW 271826 1% 100% 3
7 BACTERIAL PHOSPHATASE authKW 203868 1% 75% 3
8 PHOSPHOSERINE PHOSPHATASE authKW 201801 2% 32% 7
9 ACID PHOSPHOHYDROLASES authKW 181218 1% 100% 2
10 DDDD PHOSPHOHYDROLASE SUPERFAMILY authKW 181218 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 1300 52% 0% 174
2 Microbiology 938 23% 0% 77
3 Biophysics 423 14% 0% 46
4 Biochemical Research Methods 213 9% 0% 31
5 Biotechnology & Applied Microbiology 155 10% 0% 35
6 Crystallography 117 6% 0% 19
7 Medicine, Legal 34 1% 0% 4
8 Food Science & Technology 8 3% 0% 10
9 Toxicology 3 2% 0% 6
10 Genetics & Heredity 2 3% 0% 9

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL MOL CELULAR PLANTAS EDUARDO PRIMO YUF 120810 1% 67% 2
2 DIPARTIMENTO BIOL MOLEC SEZ MICROBIOL 120810 1% 67% 2
3 ASIAN LIFE SCI 90609 0% 100% 1
4 BIOCHEM ROLLINS 90609 0% 100% 1
5 FERMENTAT BIOTECHN 90609 0% 100% 1
6 FUJIAN CHEM BIOL 90609 0% 100% 1
7 GENE FUCT DEV 90609 0% 100% 1
8 MED POS EDUC 90609 0% 100% 1
9 POLICLIN MARIA SCOTTE 90609 0% 100% 1
10 SYNCHROTRON SCI GRP 90609 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JAPANESE JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH 4380 1% 1% 5
2 ACTA PATHOLOGICA ET MICROBIOLOGICA SCANDINAVICA SECTION B-MICROBIOLOGY 2873 1% 2% 2
3 ZEITSCHRIFT FUR RECHTSMEDIZIN-JOURNAL OF LEGAL MEDICINE 2195 1% 1% 4
4 ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS 1888 2% 0% 8
5 ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY 1152 1% 0% 4
6 BIOCHEMISTRY 872 7% 0% 23
7 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 685 2% 0% 7
8 ANTONIE VAN LEEUWENHOEK JOURNAL OF MICROBIOLOGY 632 1% 0% 2
9 BIOLOGICAL CHEMISTRY HOPPE-SEYLER 530 1% 0% 3
10 JOURNAL OF FERMENTATION AND BIOENGINEERING 364 1% 0% 3

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 UDP SUGAR HYDROLASE 465986 2% 86% 6 Search UDP+SUGAR+HYDROLASE Search UDP+SUGAR+HYDROLASE
2 SUGAR PHOSPHATASES 362435 1% 100% 4 Search SUGAR+PHOSPHATASES Search SUGAR+PHOSPHATASES
3 HAD SUPERFAMILY 305199 2% 42% 8 Search HAD+SUPERFAMILY Search HAD+SUPERFAMILY
4 CLASS B PHOSPHATASE 271826 1% 100% 3 Search CLASS+B+PHOSPHATASE Search CLASS+B+PHOSPHATASE
5 CLASS C ACID PHOSPHATASE 271826 1% 100% 3 Search CLASS+C+ACID+PHOSPHATASE Search CLASS+C+ACID+PHOSPHATASE
6 MAB 1D7 271826 1% 100% 3 Search MAB+1D7 Search MAB+1D7
7 BACTERIAL PHOSPHATASE 203868 1% 75% 3 Search BACTERIAL+PHOSPHATASE Search BACTERIAL+PHOSPHATASE
8 PHOSPHOSERINE PHOSPHATASE 201801 2% 32% 7 Search PHOSPHOSERINE+PHOSPHATASE Search PHOSPHOSERINE+PHOSPHATASE
9 ACID PHOSPHOHYDROLASES 181218 1% 100% 2 Search ACID+PHOSPHOHYDROLASES Search ACID+PHOSPHOHYDROLASES
10 DDDD PHOSPHOHYDROLASE SUPERFAMILY 181218 1% 100% 2 Search DDDD+PHOSPHOHYDROLASE+SUPERFAMILY Search DDDD+PHOSPHOHYDROLASE+SUPERFAMILY

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 DUNAWAY-MARIANO, D , ALLEN, KN , (2009) MARKERS OF FITNESS IN A SUCCESSFUL ENZYME SUPERFAMILY.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 19. ISSUE 6. P. 658 -665 19 66% 35
2 HUANG, H , PATSKOVSKY, Y , TORO, R , FARELLI, JD , PANDYA, C , ALMO, SC , ALLEN, KN , DUNAWAY-MARIANO, D , (2011) DIVERGENCE OF STRUCTURE AND FUNCTION IN THE HALOACID DEHALOGENASE ENZYME SUPERFAMILY: BACTEROIDES THETAIOTAOMICRON BT2127 IS AN INORGANIC PYROPHOSPHATASE.BIOCHEMISTRY. VOL. 50. ISSUE 41. P. 8937 -8949 19 56% 11
3 PARK, J , GUGGISBERG, AM , ODOM, AR , TOLIA, NH , (2015) CAP-DOMAIN CLOSURE ENABLES DIVERSE SUBSTRATE RECOGNITION BY THE C2-TYPE HALOACID DEHALOGENASE-LIKE SUGAR PHOSPHATASE PLASMODIUM FALCIPARUM HAD1.ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. VOL. 71. ISSUE . P. 1824 -1834 20 49% 1
4 CALDERONE, V , FORLEO, C , BENVENUTI, M , THALLER, MC , ROSSOLINI, GM , MANGANI, S , (2006) A STRUCTURE-BASED PROPOSAL FOR THE CATALYTIC MECHANISM OF THE BACTERIAL ACID PHOSPHATASE APHA BELONGING TO THE DDDD SUPERFAMILY OF PHOSPHOHYDROLASES.JOURNAL OF MOLECULAR BIOLOGY. VOL. 355. ISSUE 4. P. 708-721 20 57% 12
5 CAPARROS-MARTIN, JA , MCCARTHY-SUAREZ, I , CULIANEZ-MACIA, FA , (2013) HAD HYDROLASE FUNCTION UNVEILED BY SUBSTRATE SCREENING: ENZYMATIC CHARACTERIZATION OF ARABIDOPSIS THALIANA SUBCLASS I PHOSPHOSUGAR PHOSPHATASE ATSGPP.PLANTA. VOL. 237. ISSUE 4. P. 943-954 18 50% 8
6 NGUYEN, HH , WANG, LB , HUANG, H , PEISACH, E , DUNAWAY-MARIANO, D , ALLEN, KN , (2010) STRUCTURAL DETERMINANTS OF SUBSTRATE RECOGNITION IN THE HAD SUPERFAMILY MEMBER D-GLYCERO-D-MANNO-HEPTOSE-1,7-BISPHOSPHATE PHOSPHATASE (GMHB).BIOCHEMISTRY. VOL. 49. ISSUE 6. P. 1082 -1092 19 51% 11
7 CAPARROS-MARTIN, JA , MCCARTHY-SUAREZ, I , CULIANEZ-MACIA, FA , (2014) THE KINETIC ANALYSIS OF THE SUBSTRATE SPECIFICITY OF MOTIF 5 IN A HAD HYDROLASE-TYPE PHOSPHOSUGAR PHOSPHATASE OF ARABIDOPSIS THALIANA.PLANTA. VOL. 240. ISSUE 3. P. 479 -487 17 52% 1
8 LAHIRI, SD , ZHANG, GF , DUNAWAY-MARIANO, D , ALLEN, KN , (2006) DIVERSIFICATION OF FUNCTION IN THE HALOACID DEHALOGENASE ENZYME SUPERFAMILY: THE ROLE OF THE CAP DOMAIN IN HYDROLYTIC PHOSPHORUS-CARBON BOND CLEAVAGE.BIOORGANIC CHEMISTRY. VOL. 34. ISSUE 6. P. 394-409 20 51% 16
9 SEIFRIED, A , BERGERON, A , BOIVIN, B , GOHLA, A , (2016) REVERSIBLE OXIDATION CONTROLS THE ACTIVITY AND OLIGOMERIC STATE OF THE MAMMALIAN PHOSPHOGLYCOLATE PHOSPHATASE AUM.FREE RADICAL BIOLOGY AND MEDICINE. VOL. 97. ISSUE . P. 75 -84 18 39% 2
10 SINGH, H , MALINSKI, TJ , REILLY, TJ , HENZL, MT , TANNER, JJ , (2011) CRYSTAL STRUCTURE AND IMMUNOGENICITY OF THE CLASS C ACID PHOSPHATASE FROM PASTEURELLA MULTOCIDA.ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. VOL. 509. ISSUE 1. P. 76 -81 15 52% 2

Classes with closest relation at Level 1


Rank Class id link
1 24828 ECOM//FARMACOS//ONCOBIOL MOL OMOL
2 35859 1 3 4 TRIHYDROXYBUTYL 1 PHOSPHONATE//4 HYDROXY 3 OXOBUTYL 1 PHOSPHONATE//ACTIVATION NONESSENTIAL
3 28022 SERINE BIOSYNTHESIS//SERINE DEFICIENCY//3 PHOSPHOGLYCERATE DEHYDROGENASE
4 25683 PHOSPHOGLYCERATE MUTASE//BISPHOSPHOGLYCERATE MUTASE//2 3 BISPHOSPHOGLYCERATE PHOSPHATASE
5 18960 C P LYASE//CARBON PHOSPHORUS BOND//PHN OPERON
6 23801 PHOSPHOROTHIOLATE//DIPHOSPHATE ANIONS//CELL MOL BIOL ICM
7 25307 UNIT FUNCT BIONANOMAT//CITROBACTER SP//BIO PD
8 13855 5 NUCLEOTIDASE//CN II//PYRIMIDINE 5 NUCLEOTIDASE
9 24694 PARAVEINAL MESOPHYLL//ACID PHOSPHATASE//BRIX ACID RATIO
10 15289 DEHALOGENASE//HALOALKANE DEHALOGENASE//LO MIDT S

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