Class information for:
Level 2: AGROBACTERIUM RHIZOGENES//HAIRY ROOTS//CATHARANTHUS ROSEUS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1905 5909 30.3 57%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
409 3       BERBERINE//ALKALOIDS//RUTACEAE 29426
1905 2             AGROBACTERIUM RHIZOGENES//HAIRY ROOTS//CATHARANTHUS ROSEUS 5909
4692 1                   AGROBACTERIUM RHIZOGENES//HAIRY ROOTS//TROPANE ALKALOIDS 1743
6115 1                   PLANT CELL CULTURE//DEV ADV HORT TECHNOL//ADVENTITIOUS ROOT CULTURES 1527
9524 1                   CATHARANTHUS ROSEUS//TERPENOID INDOLE ALKALOIDS//STRICTOSIDINE SYNTHASE 1148
13925 1                   PAPAVER SOMNIFERUM//OPIUM POPPY//BENZYLISOQUINOLINE ALKALOIDS 804
26985 1                   PUTRESCINE N METHYLTRANSFERASE//METHYLPUTRESCINE OXIDASE//NICOTINE N DEMETHYLASE 240
27401 1                   PHOTOMIXOTROPHY//CELL CULTURE PHOTOAUTOTROPHIC//LIVERWORT CELLS 230
27970 1                   ERYTHROXYLACEAE//CIS CINNAMOYLCOCAINE//ERYTHROXYLUM COCA VAR IPADU 217

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 AGROBACTERIUM RHIZOGENES authKW 1160255 6% 62% 365
2 HAIRY ROOTS authKW 1041950 7% 49% 409
3 CATHARANTHUS ROSEUS authKW 906654 6% 52% 336
4 TROPANE ALKALOIDS authKW 552224 3% 59% 180
5 PLANT CELL CULTURE authKW 348737 3% 42% 160
6 PAPAVER SOMNIFERUM authKW 277730 1% 61% 88
7 TERPENOID INDOLE ALKALOIDS authKW 273348 1% 84% 63
8 ROL GENES authKW 252890 1% 80% 61
9 HYOSCYAMINE authKW 223945 1% 62% 70
10 HAIRY ROOT CULTURE authKW 222356 2% 45% 96

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Plant Sciences 74627 49% 1% 2906
2 Biotechnology & Applied Microbiology 21938 26% 0% 1564
3 Integrative & Complementary Medicine 3810 3% 0% 190
4 Chemistry, Medicinal 2847 7% 0% 425
5 Biochemistry & Molecular Biology 2818 22% 0% 1284
6 Food Science & Technology 912 6% 0% 333
7 Agronomy 736 4% 0% 212
8 Horticulture 724 2% 0% 122
9 Pharmacology & Pharmacy 409 8% 0% 447
10 Biochemical Research Methods 184 3% 0% 169

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DEV ADV HORT TECHNOL 158273 1% 38% 81
2 BIOL ENGN TRADIT CHINESE MED 48077 0% 85% 11
3 IND COOPERAT FDN AGRIBUSINESS INCUBATOR 41325 0% 100% 8
4 PLANT BIOTECHNOL SECONDARY PROD SECT 39671 0% 59% 13
5 FOOD BIOTECHNOL FOOD CHEM 36160 0% 100% 7
6 BIOMOL BIOTECHNOL VEGETALES EA2106 35412 0% 57% 12
7 MT TAIGA STN 33057 0% 80% 8
8 CBN PLANTECH CO LTD 30994 0% 100% 6
9 EA BIOMOL BIOTECHNOL VEGETALES 2106 28689 0% 56% 10
10 BIOL RHIZOSPHERE PHYTOPHARM 25828 0% 100% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT CELL REPORTS 81806 5% 5% 292
2 PLANT CELL TISSUE AND ORGAN CULTURE 77989 5% 6% 274
3 PHYTOCHEMISTRY 29889 6% 2% 360
4 IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT 17183 1% 4% 80
5 PLANTA MEDICA 15367 2% 2% 145
6 BIOTECHNOLOGY LETTERS 12385 3% 2% 151
7 PLANT SCIENCE 10479 2% 2% 118
8 BIOTECHNOLOGY AND BIOENGINEERING 7486 2% 1% 132
9 JOURNAL OF PLANT PHYSIOLOGY 7409 2% 1% 103
10 JOURNAL OF FERMENTATION AND BIOENGINEERING 6983 1% 2% 55

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 AGROBACTERIUM RHIZOGENES 1160255 6% 62% 365 Search AGROBACTERIUM+RHIZOGENES Search AGROBACTERIUM+RHIZOGENES
2 HAIRY ROOTS 1041950 7% 49% 409 Search HAIRY+ROOTS Search HAIRY+ROOTS
3 CATHARANTHUS ROSEUS 906654 6% 52% 336 Search CATHARANTHUS+ROSEUS Search CATHARANTHUS+ROSEUS
4 TROPANE ALKALOIDS 552224 3% 59% 180 Search TROPANE+ALKALOIDS Search TROPANE+ALKALOIDS
5 PLANT CELL CULTURE 348737 3% 42% 160 Search PLANT+CELL+CULTURE Search PLANT+CELL+CULTURE
6 PAPAVER SOMNIFERUM 277730 1% 61% 88 Search PAPAVER+SOMNIFERUM Search PAPAVER+SOMNIFERUM
7 TERPENOID INDOLE ALKALOIDS 273348 1% 84% 63 Search TERPENOID+INDOLE+ALKALOIDS Search TERPENOID+INDOLE+ALKALOIDS
8 ROL GENES 252890 1% 80% 61 Search ROL+GENES Search ROL+GENES
9 HYOSCYAMINE 223945 1% 62% 70 Search HYOSCYAMINE Search HYOSCYAMINE
10 HAIRY ROOT CULTURE 222356 2% 45% 96 Search HAIRY+ROOT+CULTURE Search HAIRY+ROOT+CULTURE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ZIEGLER, J , FACCHINI, PJ , (2008) ALKALOID BIOSYNTHESIS: METABOLISM AND TRAFFICKING.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 59. ISSUE . P. 735-769 136 77% 164
2 FACCHINI, PJ , DE LUCA, V , (2008) OPIUM POPPY AND MADAGASCAR PERIWINKLE: MODEL NON-MODEL SYSTEMS TO INVESTIGATE ALKALOID BIOSYNTHESIS IN PLANTS.PLANT JOURNAL. VOL. 54. ISSUE 4. P. 763 -784 126 86% 80
3 FACCHINI, PJ , (2001) ALKALOID BIOSYNTHESIS IN PLANTS: BIOCHEMISTRY, CELL BIOLOGY, MOLECULAR REGULATION, AND METABOLIC ENGINEERING APPLICATIONS.ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY. VOL. 52. ISSUE . P. 29 -66 138 82% 241
4 HAGEL, JM , FACCHINI, PJ , (2013) BENZYLISOQUINOLINE ALKALOID METABOLISM: A CENTURY OF DISCOVERY AND A BRAVE NEW WORLD.PLANT AND CELL PHYSIOLOGY. VOL. 54. ISSUE 5. P. 647-672 103 77% 47
5 THAMM, AMK , QU, Y , DE LUCA, V , (2016) DISCOVERY AND METABOLIC ENGINEERING OF IRIDOID/SECOIRIDOID AND MONOTERPENOID INDOLE ALKALOID BIOSYNTHESIS.PHYTOCHEMISTRY REVIEWS. VOL. 15. ISSUE 3. P. 339 -361 101 79% 2
6 BEAUDOIN, GAW , FACCHINI, PJ , (2014) BENZYLISOQUINOLINE ALKALOID BIOSYNTHESIS IN OPIUM POPPY.PLANTA. VOL. 240. ISSUE 1. P. 19 -32 85 83% 25
7 PAN, QF , MUSTAFA, NR , TANG, KX , CHOI, YH , VERPOORTE, R , (2016) MONOTERPENOID INDOLE ALKALOIDS BIOSYNTHESIS AND ITS REGULATION IN CATHARANTHUS ROSEUS: A LITERATURE REVIEW FROM GENES TO METABOLITES.PHYTOCHEMISTRY REVIEWS. VOL. 15. ISSUE 2. P. 221 -250 88 66% 6
8 O'CONNOR, SE , MARESH, JJ , (2006) CHEMISTRY AND BIOLOGY OF MONOTERPENE INDOLE ALKALOID BIOSYNTHESIS.NATURAL PRODUCT REPORTS. VOL. 23. ISSUE 4. P. 532-547 89 82% 266
9 MURTHY, HN , LEE, EJ , PAEK, KY , (2014) PRODUCTION OF SECONDARY METABOLITES FROM CELL AND ORGAN CULTURES: STRATEGIES AND APPROACHES FOR BIOMASS IMPROVEMENT AND METABOLITE ACCUMULATION.PLANT CELL TISSUE AND ORGAN CULTURE. VOL. 118. ISSUE 1. P. 1 -16 86 72% 44
10 CANTO-CANCHE, B , LOYOLA-VARGAS, VM , (1999) CHEMICALS FROM ROOTS, HAIRY ROOTS, AND THEIR APPLICATION.CHEMICALS VIA HIGHER PLANT BIOENGINEERING. VOL. 464. ISSUE . P. 235 -275 198 62% 10

Classes with closest relation at Level 2


Rank Class id link
1 2608 CROWN GALL//TI PLASMID//BACTERIAL CONJUGATION
2 1411 ANTHOCYANINS//CHALCONE SYNTHASE//ANTHOCYANIN BIOSYNTHESIS
3 3577 WITHANOLIDES//WITHANIA SOMNIFERA//WITHAFERIN A
4 2148 IBOGAINE//SALVINORIN A//SALVIA DIVINORUM
5 95 PLANT CELL TISSUE AND ORGAN CULTURE//SOMATIC EMBRYOGENESIS//MICROPROPAGATION
6 3587 CENTELLA ASIATICA//ASIATICOSIDE//BACOPA MONNIERA
7 2912 DITERPENOID ALKALOIDS//CHEM MED NAT PROD//ACONITINE
8 2133 TETRANDRINE//SINOMENINE//MENISPERMACEAE
9 1585 ISOPRENOID BIOSYNTHESIS//ISOPRENOIDS//TERPENE SYNTHASE
10 3648 MORINDA CITRIFOLIA//NONI//RUBIACEAE

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