Class information for:
Level 2: PHYTOCHROME//PHOTOTROPIN//PHOTOMORPHOGENESIS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2289 4572 44.0 78%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
7 3       PLANT SCIENCES//PLANT PHYSIOLOGY//ARABIDOPSIS 149859
2289 2             PHYTOCHROME//PHOTOTROPIN//PHOTOMORPHOGENESIS 4572
1238 1                   PHYTOCHROME//PHOTOMORPHOGENESIS//PHYTOCHROME A 2767
7757 1                   PHOTOTROPIN//CHLOROPLAST MOVEMENT//LOV DOMAIN 1331
20149 1                   PHOTOACTIVE YELLOW PROTEIN//PHOTOACTIVE YELLOW PROTEIN PYP//XANTHOPSINS 474

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHYTOCHROME authKW 1508930 11% 45% 498
2 PHOTOTROPIN authKW 646322 3% 83% 116
3 PHOTOMORPHOGENESIS authKW 582444 5% 42% 207
4 CHLOROPLAST MOVEMENT authKW 382561 2% 78% 73
5 LOV DOMAIN authKW 228604 1% 80% 43
6 PHOTOACTIVE YELLOW PROTEIN authKW 211752 1% 77% 41
7 PHYTOCHROME A authKW 204818 1% 65% 47
8 BLUE LIGHT authKW 201154 3% 21% 143
9 LIGHT SIGNALING authKW 189203 1% 47% 60
10 CRYPTOCHROME authKW 178654 2% 27% 99

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Plant Sciences 49606 46% 0% 2090
2 Biochemistry & Molecular Biology 9578 40% 0% 1806
3 Biophysics 6446 14% 0% 658
4 Cell Biology 3396 16% 0% 711
5 Chemistry, Physical 427 10% 0% 443
6 Physics, Atomic, Molecular & Chemical 333 5% 0% 215
7 Developmental Biology 143 2% 0% 69
8 Biochemical Research Methods 40 2% 0% 92
9 Genetics & Heredity 34 3% 0% 123
10 Biology 19 1% 0% 61

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL EXPT BIOPHYS 98096 1% 64% 23
2 BIOL REGULAT PHOTOBIOL 96405 0% 76% 19
3 LASER BIOCHEM 66769 0% 100% 10
4 PLANT GENE EXP S 64698 1% 15% 64
5 LASER BIOSCI 60697 0% 91% 10
6 BIOL BOT 2 60147 1% 35% 26
7 IFEVA 54557 1% 13% 65
8 PEKING YALE JOINT PLANT MOL GENET AGROBIOTE 47103 1% 22% 32
9 PLANT DEV MOL BIOL 41597 0% 69% 9
10 EXPT ANGEW PHYS 2 41037 1% 27% 23

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHOTOCHEMISTRY AND PHOTOBIOLOGY 57996 6% 3% 270
2 PLANT CELL 39794 4% 3% 189
3 PLANT PHYSIOLOGY 32796 7% 2% 323
4 PLANTA 29588 4% 2% 198
5 PLANT AND CELL PHYSIOLOGY 24533 3% 2% 160
6 PLANT CELL AND ENVIRONMENT 22667 3% 3% 131
7 PLANT JOURNAL 21428 3% 2% 153
8 PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES 9978 1% 2% 64
9 MOLECULAR PLANT 8945 1% 4% 36
10 JOURNAL OF PLANT RESEARCH 6752 1% 2% 41

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PHYTOCHROME 1508930 11% 45% 498 Search PHYTOCHROME Search PHYTOCHROME
2 PHOTOTROPIN 646322 3% 83% 116 Search PHOTOTROPIN Search PHOTOTROPIN
3 PHOTOMORPHOGENESIS 582444 5% 42% 207 Search PHOTOMORPHOGENESIS Search PHOTOMORPHOGENESIS
4 CHLOROPLAST MOVEMENT 382561 2% 78% 73 Search CHLOROPLAST+MOVEMENT Search CHLOROPLAST+MOVEMENT
5 LOV DOMAIN 228604 1% 80% 43 Search LOV+DOMAIN Search LOV+DOMAIN
6 PHOTOACTIVE YELLOW PROTEIN 211752 1% 77% 41 Search PHOTOACTIVE+YELLOW+PROTEIN Search PHOTOACTIVE+YELLOW+PROTEIN
7 PHYTOCHROME A 204818 1% 65% 47 Search PHYTOCHROME+A Search PHYTOCHROME+A
8 BLUE LIGHT 201154 3% 21% 143 Search BLUE+LIGHT Search BLUE+LIGHT
9 LIGHT SIGNALING 189203 1% 47% 60 Search LIGHT+SIGNALING Search LIGHT+SIGNALING
10 CRYPTOCHROME 178654 2% 27% 99 Search CRYPTOCHROME Search CRYPTOCHROME

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 KAMI, C , LORRAIN, S , HORNITSCHEK, P , FANKHAUSER, C , (2010) LIGHT-REGULATED PLANT GROWTH AND DEVELOPMENT.PLANT DEVELOPMENT. VOL. 91. ISSUE . P. 29-66 171 71% 180
2 LOSI, A , GARTNER, W , (2011) OLD CHROMOPHORES, NEW PHOTOACTIVATION PARADIGMS, TRENDY APPLICATIONS: FLAVINS IN BLUE LIGHT-SENSING PHOTORECEPTORS.PHOTOCHEMISTRY AND PHOTOBIOLOGY. VOL. 87. ISSUE 3. P. 491 -510 163 75% 60
3 CHEN, M , CHORY, J , FANKHAUSER, C , (2004) LIGHT SIGNAL TRANSDUCTION IN HIGHER PLANTS.ANNUAL REVIEW OF GENETICS. VOL. 38. ISSUE . P. 87-117 145 77% 429
4 CHEN, M , CHORY, J , (2011) PHYTOCHROME SIGNALING MECHANISMS AND THE CONTROL OF PLANT DEVELOPMENT.TRENDS IN CELL BIOLOGY. VOL. 21. ISSUE 11. P. 664-671 108 92% 103
5 BAE, G , CHOI, G , (2008) DECODING OF LIGHT SIGNALS BY PLANT PHYTOCHROMES AND THEIR INTERACTING PROTEINS.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 59. ISSUE . P. 281 -311 120 82% 172
6 SINESHCHEKOV, VA , (1995) PHOTOBIOPHYSICS AND PHOTOBIOCHEMISTRY OF THE HETEROGENEOUS PHYTOCHROME SYSTEM.BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS. VOL. 1228. ISSUE 2-3. P. 125 -164 198 86% 70
7 HUGHES, J , (2013) PHYTOCHROME CYTOPLASMIC SIGNALING.ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64. VOL. 64. ISSUE . P. 377-402 110 85% 26
8 WANG, HY , (2005) SIGNALING MECHANISMS OF HIGHER PLANT PHOTORECEPTORS: A STRUCTURE-FUNCTION PERSPECTIVE.CURRENT TOPICS IN DEVELOPMENTAL BIOLOGY, VOLUME 68. VOL. 68. ISSUE . P. 227 -+ 149 85% 23
9 MENON, C , SHEERIN, DJ , HILTBRUNNER, A , (2016) SPA PROTEINS: SPANNING THE GAP BETWEEN VISIBLE LIGHT AND GENE EXPRESSION.PLANTA. VOL. 244. ISSUE 2. P. 297 -312 110 79% 2
10 FRANKLIN, KA , QUAIL, PH , (2010) PHYTOCHROME FUNCTIONS IN ARABIDOPSIS DEVELOPMENT.JOURNAL OF EXPERIMENTAL BOTANY. VOL. 61. ISSUE 1. P. 11 -24 89 81% 234

Classes with closest relation at Level 2


Rank Class id link
1 1324 PROTOCHLOROPHYLLIDE//CHLOROPHYLL BIOSYNTHESIS//PLASTID TRANSFORMATION
2 135 PLANT SCIENCES//ARABIDOPSIS//PLANT CELL
3 2416 UV B RADIATION//UV B//ULTRAVIOLET B RADIATION
4 914 GUARD CELL//PLANT SCIENCES//PLANT PHYSIOLOGY
5 2157 GRAVITROPISM//AQUAPORIN//ENDODERMIS
6 1025 CYTOKININ//GIBBERELLIN//ABSCISIC ACID
7 1593 XERODERMA PIGMENTOSUM//COCKAYNE SYNDROME//NUCLEOTIDE EXCISION REPAIR
8 2396 BACTERIORHODOPSIN//PURPLE MEMBRANE//PHOTOCYCLE
9 887 HORTICULTURE//HORTSCIENCE//GREENHOUSE
10 1105 CYANOBACTERIA//PHYCOBILISOME//CYANOBACTERIUM

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