Class information for:
Level 2: PROTEOMICS//JOURNAL OF PROTEOME RESEARCH//BIOCHEMICAL RESEARCH METHODS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
370 17272 40.2 82%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
157 3       JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//BIOCHEMICAL RESEARCH METHODS//INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 61558
370 2             PROTEOMICS//JOURNAL OF PROTEOME RESEARCH//BIOCHEMICAL RESEARCH METHODS 17272
1508 1                   PEPTIDE IDENTIFICATION//JOURNAL OF PROTEOME RESEARCH//PROTEIN IDENTIFICATION 2620
2078 1                   SELDI//SELDI TOF MS//PROTEOMICS 2364
4677 1                   PHOSPHOPROTEOMICS//PHOSPHOPEPTIDES//PHOSPHOPEPTIDE ENRICHMENT 1744
6883 1                   PREFRACTIONATION//FASP//SDS REMOVAL 1433
8239 1                   QUANTITATIVE PROTEOMICS//STABLE ISOTOPE LABELING//ISOBARIC TAG 1276
8962 1                   TWO DIMENSIONAL POLYACRYLAMIDE GEL ELECTROPHORESIS//MYOCARDIAL PROTEINS//ELECTROPHORESIS 1200
9567 1                   TARGETED PROTEOMICS//SELECTED REACTION MONITORING//MULTIPLE REACTION MONITORING 1143
9736 1                   PROTEIN STAINING//LOADING CONTROL//ZHEJIANG PROV BIOPHARMACEUT 1125
9843 1                   SPOT MATCHING//SPOT DETECTION//PROTEIN SPOT DETECTION 1115
14482 1                   URINARY PROTEOMICS//URINARY PROTEOME//URINE PROTEOME 767
22435 1                   SECRETOME//90K MAC 2BP//GALECTIN 3 BINDING PROTEIN 381
22624 1                   PLATELET PROTEOME//VASC PHYSIOPATHOL//HEMOGLOBIN DEPLETION 374
23215 1                   DEGRADOMICS//LIFE SCI 4 401//N TERMINOMICS 354
27510 1                   CALCYPHOSINE//HUMAN BRONCHOALVEOLAR LAVAGE FLUID PROTEINS//LUNG TISSUE PROFILING 228
28292 1                   RETICULOCALBIN//CALUMENIN//BIOCHEM BIOMOL RECOGNIT 210
28400 1                   SKELETAL MUSCLE PROTEOMICS//MUSCLE PROTEOMICS//FIBRE TRANSITION 207
28952 1                   HUMAN FOLLICULAR FLUID//CLIN SUEDSTADT//AMNIOTIC FLUID SUPERNATANT 196
33898 1                   LRG1//LEUCINE RICH ALPHA 2 GLYCOPROTEIN 1//LEUCINE RICH ALPHA 2 GLYCOPROTEIN 119
35170 1                   NONDENATURING MICRO 2DE//NON DENATURING 2 DE//NON DENATURING 101
35923 1                   2 DE MAP//DATA INDEPENDENT SCANNING//2 DE TWO DIMENSIONAL GEL ELECTROPHORESIS 89
36263 1                   IER2//PIP92//PROTEINPAEDIA 83
36652 1                   GLOBAL OLARS PROGRAM//BIOINFORMAT STRUCT BIOL//ST GEORGES UNIV 77
37113 1                   PRIMARY HUMAN CELLS//DR 70//CELL TYPE SPECIFIC SIGNATURES 66

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 PROTEOMICS journal 725852 9% 27% 1533
2 JOURNAL OF PROTEOME RESEARCH journal 715107 9% 26% 1571
3 BIOCHEMICAL RESEARCH METHODS WoSSC 456334 54% 3% 9284
4 MASS SPECTROMETRY authKW 306301 12% 8% 2076
5 MOLECULAR & CELLULAR PROTEOMICS journal 273935 4% 23% 692
6 PROTEIN IDENTIFICATION authKW 261841 2% 53% 281
7 QUANTITATIVE PROTEOMICS authKW 206633 2% 38% 307
8 ELECTROPHORESIS journal 204183 7% 10% 1162
9 PHOSPHOPROTEOMICS authKW 202054 1% 49% 234
10 TWO DIMENSIONAL GEL ELECTROPHORESIS authKW 177116 2% 25% 408

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemical Research Methods 456334 54% 3% 9284
2 Chemistry, Analytical 57869 26% 1% 4409
3 Biochemistry & Molecular Biology 12554 26% 0% 4410
4 Mathematical & Computational Biology 4745 3% 1% 577
5 Spectroscopy 3107 4% 0% 747
6 Medical Laboratory Technology 2557 2% 0% 392
7 Biotechnology & Applied Microbiology 2036 6% 0% 1050
8 Oncology 281 4% 0% 760
9 Medicine, Research & Experimental 203 3% 0% 439
10 Biophysics 164 2% 0% 399

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOL SYST BIOL 80353 1% 21% 218
2 PROTE SIGNAL TRANSDUCT 66464 1% 35% 109
3 BEIJING PROTEOME 38074 0% 25% 85
4 MED PROT 36542 1% 19% 108
5 EXPT BIOINFORMAT 33710 0% 38% 51
6 CHROMATOG RA 30797 1% 19% 92
7 JIM AYERS PRECANC DETECT DIAG 30592 0% 67% 26
8 PROTEOME INFORMAT GRP 29745 0% 54% 31
9 MED PROTEOM 25896 0% 23% 65
10 YONSEI PROTEOME 25871 0% 37% 40

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 PROTEOMICS 725852 9% 27% 1533
2 JOURNAL OF PROTEOME RESEARCH 715107 9% 26% 1571
3 MOLECULAR & CELLULAR PROTEOMICS 273935 4% 23% 692
4 ELECTROPHORESIS 204183 7% 10% 1162
5 PROTEOMICS CLINICAL APPLICATIONS 146894 2% 30% 277
6 JOURNAL OF PROTEOMICS 122285 2% 16% 428
7 EXPERT REVIEW OF PROTEOMICS 113297 1% 30% 217
8 ANALYTICAL BIOCHEMISTRY 42786 4% 4% 675
9 PROTEOME SCIENCE 40450 1% 20% 113
10 ANALYTICAL CHEMISTRY 24027 4% 2% 713

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class		 LCSH search Wikipedia search
1 PROTEOMICS 720570 14% 17% 2384 Search PROTEOMICS Search PROTEOMICS
2 MASS SPECTROMETRY 306301 12% 8% 2076 Search MASS+SPECTROMETRY Search MASS+SPECTROMETRY
3 PROTEIN IDENTIFICATION 261841 2% 53% 281 Search PROTEIN+IDENTIFICATION Search PROTEIN+IDENTIFICATION
4 QUANTITATIVE PROTEOMICS 206633 2% 38% 307 Search QUANTITATIVE+PROTEOMICS Search QUANTITATIVE+PROTEOMICS
5 PHOSPHOPROTEOMICS 202054 1% 49% 234 Search PHOSPHOPROTEOMICS Search PHOSPHOPROTEOMICS
6 TWO DIMENSIONAL GEL ELECTROPHORESIS 177116 2% 25% 408 Search TWO+DIMENSIONAL+GEL+ELECTROPHORESIS Search TWO+DIMENSIONAL+GEL+ELECTROPHORESIS
7 PEPTIDE IDENTIFICATION 144724 1% 73% 112 Search PEPTIDE+IDENTIFICATION Search PEPTIDE+IDENTIFICATION
8 PHOSPHOPEPTIDES 143339 1% 44% 183 Search PHOSPHOPEPTIDES Search PHOSPHOPEPTIDES
9 SELDI 127976 1% 61% 118 Search SELDI Search SELDI
10 TARGETED PROTEOMICS 117829 1% 64% 104 Search TARGETED+PROTEOMICS Search TARGETED+PROTEOMICS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ZHANG, YY , FONSLOW, BR , SHAN, B , BAEK, MC , YATES, JR , (2013) PROTEIN ANALYSIS BY SHOTGUN/BOTTOM-UP PROTEOMICS.CHEMICAL REVIEWS. VOL. 113. ISSUE 4. P. 2343 -2394 438 57% 214
2 NESVIZHSKII, AI , (2010) A SURVEY OF COMPUTATIONAL METHODS AND ERROR RATE ESTIMATION PROCEDURES FOR PEPTIDE AND PROTEIN IDENTIFICATION IN SHOTGUN PROTEOMICS.JOURNAL OF PROTEOMICS. VOL. 73. ISSUE 11. P. 2092 -2123 236 91% 171
3 VIZCAINO, JA , CSORDAS, A , DEL-TORO, N , DIANES, JA , GRISS, J , LAVIDAS, I , MAYER, G , PEREZ-RIVEROL, Y , REISINGER, F , TERNENT, T , ET AL (2016) 2016 UPDATE OF THE PRIDE DATABASE AND ITS RELATED TOOLS.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE D1. P. D447 -D456 40 83% 217
4 RILEY, NM , COON, JJ , (2016) PHOSPHOPROTEOMICS IN THE AGE OF RAPID AND DEEP PROTEOME PROFILING.ANALYTICAL CHEMISTRY. VOL. 88. ISSUE 1. P. 74 -94 174 64% 13
5 LI, XS , YUAN, BF , FENG, YQ , (2016) RECENT ADVANCES IN PHOSPHOPEPTIDE ENRICHMENT: STRATEGIES AND TECHNIQUES.TRAC-TRENDS IN ANALYTICAL CHEMISTRY. VOL. 78. ISSUE . P. 70 -83 163 96% 3
6 BANTSCHEFF, M , SAVITSKI, MM , KUSTER, B , LEMEER, S , (2012) QUANTITATIVE MASS SPECTROMETRY IN PROTEOMICS: CRITICAL REVIEW UPDATE FROM 2007 TO THE PRESENT.ANALYTICAL AND BIOANALYTICAL CHEMISTRY. VOL. 404. ISSUE 4. P. 939 -965 160 74% 222
7 ZHU, PH , BOWDEN, P , DU, Z , MARSHALL, JG , (2011) MASS SPECTROMETRY OF PEPTIDES AND PROTEINS FROM HUMAN BLOOD.MASS SPECTROMETRY REVIEWS. VOL. 30. ISSUE 5. P. 685-732 397 50% 22
8 RODRIGUEZ-SUAREZ, E , WHETTON, AD , (2013) THE APPLICATION OF QUANTIFICATION TECHNIQUES IN PROTEOMICS FOR BIOMEDICAL RESEARCH.MASS SPECTROMETRY REVIEWS. VOL. 32. ISSUE 1. P. 1 -26 208 72% 25
9 BANTSCHEFF, M , SCHIRLE, M , SWEETMAN, G , RICK, J , KUSTER, B , (2007) QUANTITATIVE MASS SPECTROMETRY IN PROTEOMICS: A CRITICAL REVIEW.ANALYTICAL AND BIOANALYTICAL CHEMISTRY. VOL. 389. ISSUE 4. P. 1017 -1031 97 86% 740
10 PICOTTI, P , AEBERSOLD, R , (2012) SELECTED REACTION MONITORING-BASED PROTEOMICS: WORKFLOWS, POTENTIAL, PITFALLS AND FUTURE DIRECTIONS.NATURE METHODS. VOL. 9. ISSUE 6. P. 555 -566 81 82% 427

Classes with closest relation at Level 2


Rank Class id link
1 2525 PROTEIN MICROARRAY//DIAZIRINE//PROTEIN ARRAY
2 1575 AMBIENT IONIZATION//RAPID COMMUNICATIONS IN MASS SPECTROMETRY//AMBIENT MASS SPECTROMETRY
3 514 ORGANIC MASS SPECTROMETRY//INTERNATIONAL JOURNAL OF MASS SPECTROMETRY//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
4 1201 TOF SIMS//IMAGING MASS SPECTROMETRY//MALDI
5 2163 ION MOBILITY SPECTROMETRY//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//ION MOBILITY
6 3564 14 3 3 PROTEIN//14 3 3//14 3 3 SIGMA
7 4166 TCTP//TRANSLATIONALLY CONTROLLED TUMOR PROTEIN//TRANSLATIONALLY CONTROLLED TUMOR PROTEIN TCTP
8 868 BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS
9 1485 METABOLOMICS//METABONOMICS//METABOLIC PROFILING
10 3815 CLUSTERIN//APOLIPOPROTEIN J//SULFATED GLYCOPROTEIN 2

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