Class information for:
Level 1: TYPE IV PILI//TYPE II SECRETION//GENERAL SECRETORY PATHWAY

Basic class information

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.

Cluster id	Level	Cluster label	#P
19	4	INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY	657099
379	3	STREPTOCOCCUS PNEUMONIAE//NEISSERIA MENINGITIDIS//COMMUNITY ACQUIRED PNEUMONIA	34189
2645	2	DICHELOBACTER NODOSUS//FOOTROT//TYPE IV PILI	3721
11890	1	TYPE IV PILI//TYPE II SECRETION//GENERAL SECRETORY PATHWAY	975

Terms with highest relevance score

rank	Category	termType	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	TYPE IV PILI	authKW	913009	7%	44%	64
2	TYPE II SECRETION	authKW	739574	3%	74%	31
3	GENERAL SECRETORY PATHWAY	authKW	346314	2%	71%	15
4	TWITCHING MOTILITY	authKW	209433	2%	36%	18
5	GENERAL SECRETION PATHWAY	authKW	206867	1%	80%	8
6	PILIN	authKW	137706	1%	30%	14
7	PSEUDOPILUS	authKW	134679	1%	83%	5
8	TYPE IV PILIN	authKW	131981	1%	58%	7
9	SECRETON	authKW	129294	0%	100%	4
10	TYPE II SECRETION SYSTEM T2SS	authKW	129294	0%	100%	4

Web of Science journal categories

chi_square_rank	Category	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	Microbiology	19173	58%	0%	565
2	Biochemistry & Molecular Biology	3056	47%	0%	457
3	Biophysics	257	7%	0%	67
4	Cell Biology	185	9%	0%	88
5	Infectious Diseases	130	4%	0%	41
6	Genetics & Heredity	100	6%	0%	55
7	Immunology	31	5%	0%	45
8	Biotechnology & Applied Microbiology	17	3%	0%	33
9	Biochemical Research Methods	16	2%	0%	23
10	Parasitiology	9	1%	0%	9

Address terms

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	UNITE GENET MOL	98484	2%	19%	16
2	UPR9027	97762	1%	28%	11
3	INTERCELLULAR COMMUN MICROBIAL INFECT	96970	0%	100%	3
4	MACROMOL SYST SIGNALLING	96970	0%	100%	3
5	URA2172	94973	1%	24%	12
6	MICHAEL G DEGROOTE INFECT DIS	94862	3%	10%	28
7	INGN SYST MACROMOL	93517	2%	12%	24
8	ERL6002	72726	0%	75%	3
9	BIOCHEM MACROMOL INTERACT UNIT	64647	0%	100%	2
10	C CINA CELLULAR IMAGING NANOANALYT	64647	0%	100%	2

Journals

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	MOLECULAR MICROBIOLOGY	56428	15%	1%	145
2	JOURNAL OF BACTERIOLOGY	37008	20%	1%	195
3	MICROBIOLOGY-SGM	3392	3%	0%	29
4	JOURNAL OF MOLECULAR BIOLOGY	1735	4%	0%	36
5	STRUCTURE	1595	1%	0%	14
6	GENE	1533	3%	0%	31
7	INFECTION AND IMMUNITY	1517	4%	0%	36
8	TRENDS IN MICROBIOLOGY	1407	1%	0%	9
9	RESEARCH IN MICROBIOLOGY	1187	1%	0%	10
10	NATURE REVIEWS MICROBIOLOGY	783	1%	0%	5

Author Key Words

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass	LCSH search	Wikipedia search
1	TYPE IV PILI	913009	7%	44%	64	Search TYPE+IV+PILI	Search TYPE+IV+PILI
2	TYPE II SECRETION	739574	3%	74%	31	Search TYPE+II+SECRETION	Search TYPE+II+SECRETION
3	GENERAL SECRETORY PATHWAY	346314	2%	71%	15	Search GENERAL+SECRETORY+PATHWAY	Search GENERAL+SECRETORY+PATHWAY
4	TWITCHING MOTILITY	209433	2%	36%	18	Search TWITCHING+MOTILITY	Search TWITCHING+MOTILITY
5	GENERAL SECRETION PATHWAY	206867	1%	80%	8	Search GENERAL+SECRETION+PATHWAY	Search GENERAL+SECRETION+PATHWAY
6	PILIN	137706	1%	30%	14	Search PILIN	Search PILIN
7	PSEUDOPILUS	134679	1%	83%	5	Search PSEUDOPILUS	Search PSEUDOPILUS
8	TYPE IV PILIN	131981	1%	58%	7	Search TYPE+IV+PILIN	Search TYPE+IV+PILIN
9	SECRETON	129294	0%	100%	4	Search SECRETON	Search SECRETON
10	TYPE II SECRETION SYSTEM T2SS	129294	0%	100%	4	Search TYPE+II+SECRETION+SYSTEM+T2SS	Search TYPE+II+SECRETION+SYSTEM+T2SS

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1

rank	cluster_id2	link
1	4261	NEISSERIA GONORRHOEAE//INFEKT BIOL ABT//NEISSERIA MENINGITIDIS
2	12597	OLIGOSACCHARYLTRANSFERASE//STT3//PGLB
3	20369	FOOTROT//DICHELOBACTER NODOSUS//OVINE FOOTROT
4	7592	EXOU//EXOS//PSEUDOMONAS AERUGINOSA
5	7986	BACTERIAL CONJUGATION//RELAXASE//COUPLING PROTEIN
6	6761	MYXOBACTERIA//MYXOCOCCUS XANTHUS//STIGMATELLA AURANTIACA
7	14231	NATURAL TRANSFORMATION//DISSOLVED DNA//YOSHIDA EFFECT
8	8636	C DI GMP//DIGUANYLATE CYCLASE//CYCLIC DI GMP
9	23646	LOLB//LOLA//LOL SYSTEM
10	10438	AUTOTRANSPORTER//AUTODISPLAY//BAM COMPLEX

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Class information for: Level 1: TYPE IV PILI//TYPE II SECRETION//GENERAL SECRETORY PATHWAY