Class information for:
Level 1: CHEMICAL MASTER EQUATION//TAU LEAPING//STOCHASTIC GENE EXPRESSION

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
393 3       METABOLOMICS//METABONOMICS//ATP SYNTHASE 32518
954 2             BOOLEAN NETWORKS//GENE REGULATORY NETWORK//GENETIC REGULATORY NETWORKS 11077
1618 1                   CHEMICAL MASTER EQUATION//TAU LEAPING//STOCHASTIC GENE EXPRESSION 2589

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 CHEMICAL MASTER EQUATION authKW 586493 2% 75% 64
2 TAU LEAPING authKW 341207 1% 97% 29
3 STOCHASTIC GENE EXPRESSION authKW 305346 2% 61% 41
4 STOCHASTIC SIMULATION ALGORITHM authKW 281997 1% 70% 33
5 LINEAR NOISE APPROXIMATION authKW 259654 1% 89% 24
6 GENE EXPRESSION NOISE authKW 205681 1% 65% 26
7 STOCHASTIC CHEMICAL KINETICS authKW 195099 1% 70% 23
8 BIOSYST DYNAM address 174003 1% 62% 23
9 INTRINSIC NOISE authKW 165351 1% 54% 25
10 GILLESPIE ALGORITHM authKW 90134 1% 37% 20

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 31544 21% 1% 531
2 Physics, Mathematical 4780 13% 0% 324
3 Biology 3502 11% 0% 283
4 Biochemical Research Methods 2416 11% 0% 283
5 Physics, Atomic, Molecular & Chemical 1796 11% 0% 296
6 Physics, Fluids & Plasmas 1680 7% 0% 174
7 Biophysics 1533 10% 0% 251
8 Biochemistry & Molecular Biology 1116 21% 0% 539
9 Cell Biology 896 11% 0% 294
10 Genetics & Heredity 507 7% 0% 186

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOSYST DYNAM 174003 1% 62% 23
2 INTEGRAT SYST BIOL UNIT 70415 0% 64% 9
3 COMPUTAT SYST BIOL GRP 70412 1% 19% 31
4 CHEM PHYS PL MATH 66339 1% 42% 13
5 BIOMED ENGNMATH SCI 36515 0% 100% 3
6 SYNTHSYS EDINBURGH 33805 0% 56% 5
7 ADV COMPUTAT MODELLING 28157 1% 18% 13
8 GENET PHYSIOL MOL CELLULAIRE CGPHIMC 27817 0% 57% 4
9 AUSTRALIAN BIOINFORMAT 24343 0% 100% 2
10 HARVARD UNIV BIOPHYS PROGRAM 24343 0% 100% 2

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PHYSICAL BIOLOGY 67262 3% 8% 70
2 IET SYSTEMS BIOLOGY 38139 1% 10% 33
3 BMC SYSTEMS BIOLOGY 24524 2% 3% 58
4 PLOS COMPUTATIONAL BIOLOGY 17850 3% 2% 86
5 MOLECULAR SYSTEMS BIOLOGY 17723 1% 4% 34
6 JOURNAL OF THEORETICAL BIOLOGY 7814 3% 1% 85
7 JOURNAL OF CHEMICAL PHYSICS 7687 9% 0% 239
8 MULTISCALE MODELING & SIMULATION 6457 1% 3% 21
9 PHYSICAL REVIEW E 6010 6% 0% 167
10 BIOPHYSICAL JOURNAL 5539 4% 0% 96

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 CHEMICAL MASTER EQUATION 586493 2% 75% 64 Search CHEMICAL+MASTER+EQUATION Search CHEMICAL+MASTER+EQUATION
2 TAU LEAPING 341207 1% 97% 29 Search TAU+LEAPING Search TAU+LEAPING
3 STOCHASTIC GENE EXPRESSION 305346 2% 61% 41 Search STOCHASTIC+GENE+EXPRESSION Search STOCHASTIC+GENE+EXPRESSION
4 STOCHASTIC SIMULATION ALGORITHM 281997 1% 70% 33 Search STOCHASTIC+SIMULATION+ALGORITHM Search STOCHASTIC+SIMULATION+ALGORITHM
5 LINEAR NOISE APPROXIMATION 259654 1% 89% 24 Search LINEAR+NOISE+APPROXIMATION Search LINEAR+NOISE+APPROXIMATION
6 GENE EXPRESSION NOISE 205681 1% 65% 26 Search GENE+EXPRESSION+NOISE Search GENE+EXPRESSION+NOISE
7 STOCHASTIC CHEMICAL KINETICS 195099 1% 70% 23 Search STOCHASTIC+CHEMICAL+KINETICS Search STOCHASTIC+CHEMICAL+KINETICS
8 INTRINSIC NOISE 165351 1% 54% 25 Search INTRINSIC+NOISE Search INTRINSIC+NOISE
9 GILLESPIE ALGORITHM 90134 1% 37% 20 Search GILLESPIE+ALGORITHM Search GILLESPIE+ALGORITHM
10 CHEMICAL LANGEVIN EQUATION 79102 1% 50% 13 Search CHEMICAL+LANGEVIN+EQUATION Search CHEMICAL+LANGEVIN+EQUATION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 22484 SEALY MOL MED//SIGNALING SYST//INTRACELLULAR DYNAMIC
2 5771 SYNTHETIC BIOLOGY//ACS SYNTHETIC BIOLOGY//GENETIC CIRCUITS
3 35871 ISOLOGOUS DIVERSIFICATION//COMPLEX SYST BIOL PROJECT//ERATO COMPLEX SYST BIOL PROJECT
4 24374 GENETIC REGULATORY NETWORKS//GENETIC REGULATORY NETWORKS GRNS//CONTROL SYST BIOL
5 9647 CHEMICAL REACTION NETWORKS//MASS ACTION KINETICS//ULTRASENSITIVITY
6 18140 NETWORK MOTIFS//TRIANGLE COUNTING//TRIANGLE LISTING
7 17262 SINGLE CELL RNA SEQ//SINGLE CELL RNA SEQUENCING//SINGLE CELL TRANSCRIPTOMICS
8 23564 NANOMED MECH BIOL//NONSPECIFIC PROTEIN DNA INTERACTIONS//TARGET SEARCH PROCESS
9 17580 CUMULANT TRUNCATION//TIME TO EXTINCTION//CRITICAL COMMUNITY SIZE
10 24110 SCALE DOWN//UNITE BIOIND CWBI//MICROBIAL STRESS

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