Class information for:
Level 1: SIR COMPLEX//SIR PROTEINS//SIR3

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12501 901 50.9 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
71 3       GENETICS & HEREDITY//CHROMATIN//CELL BIOLOGY 83302
225 2             YEAST//SACCHAROMYCES CEREVISIAE//SCHIZOSACCHAROMYCES POMBE 20517
12501 1                   SIR COMPLEX//SIR PROTEINS//SIR3 901

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SIR COMPLEX authKW 372779 1% 100% 11
2 SIR PROTEINS authKW 361472 2% 67% 16
3 SIR3 authKW 332104 2% 70% 14
4 ABF1 authKW 228747 1% 75% 9
5 SILENCING authKW 180534 6% 10% 51
6 DONOR PREFERENCE authKW 169445 1% 100% 5
7 SIR4 authKW 150955 1% 64% 7
8 UNIT CHROMATIN TRANSCRIPT address 144586 1% 53% 8
9 RECOMBINATION ENHANCER authKW 135556 0% 100% 4
10 SIR2 authKW 122389 3% 14% 25

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Cell Biology 7335 46% 0% 415
2 Biochemistry & Molecular Biology 5429 63% 0% 569
3 Genetics & Heredity 4633 30% 0% 273
4 Mycology 726 4% 0% 34
5 Developmental Biology 632 6% 0% 51
6 Biology 159 4% 0% 40
7 Microbiology 129 6% 0% 58
8 Biophysics 81 5% 0% 41
9 Biotechnology & Applied Microbiology 53 5% 0% 43
10 Biochemical Research Methods 14 2% 0% 21

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 UNIT CHROMATIN TRANSCRIPT 144586 1% 53% 8
2 FDN IST PASTEUR 35293 1% 21% 5
3 BIOL ROSENSTIEL 33889 0% 100% 1
4 BIOL SCIMOO CANC 33889 0% 100% 1
5 BIOL STRUCT RADIOBIOLCNRSURA2096 33889 0% 100% 1
6 BIOTECHNOL UNIL BIOTECHNOL MOL UNIL 33889 0% 100% 1
7 BIOTECHNOLISPFSB MOL BIOTECHNOL 33889 0% 100% 1
8 CNRS ENSSL 5665 33889 0% 100% 1
9 CNRS UNITE MIXTE RECH BIOL MOL CELLULAIRE 33889 0% 100% 1
10 DSV DBCM SERV BIOCHEM GENET MOL 33889 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENETICS 30962 12% 1% 108
2 MOLECULAR AND CELLULAR BIOLOGY 23814 14% 1% 125
3 YEAST 8044 3% 1% 26
4 GENES & DEVELOPMENT 7991 5% 1% 42
5 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 4394 2% 1% 17
6 CELL 3400 4% 0% 39
7 MOLECULAR CELL 1985 2% 0% 18
8 EMBO JOURNAL 1861 3% 0% 31
9 CURRENT GENETICS 1783 2% 0% 14
10 NUCLEIC ACIDS RESEARCH 1384 5% 0% 41

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SIR COMPLEX 372779 1% 100% 11 Search SIR+COMPLEX Search SIR+COMPLEX
2 SIR PROTEINS 361472 2% 67% 16 Search SIR+PROTEINS Search SIR+PROTEINS
3 SIR3 332104 2% 70% 14 Search SIR3 Search SIR3
4 ABF1 228747 1% 75% 9 Search ABF1 Search ABF1
5 SILENCING 180534 6% 10% 51 Search SILENCING Search SILENCING
6 DONOR PREFERENCE 169445 1% 100% 5 Search DONOR+PREFERENCE Search DONOR+PREFERENCE
7 SIR4 150955 1% 64% 7 Search SIR4 Search SIR4
8 RECOMBINATION ENHANCER 135556 0% 100% 4 Search RECOMBINATION+ENHANCER Search RECOMBINATION+ENHANCER
9 SIR2 122389 3% 14% 25 Search SIR2 Search SIR2
10 YEAST MATING TYPE 76249 0% 75% 3 Search YEAST+MATING+TYPE Search YEAST+MATING+TYPE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 GARTENBERG, MR , SMITH, JS , (2016) THE NUTS AND BOLTS OF TRANSCRIPTIONALLY SILENT CHROMATIN IN SACCHAROMYCES CEREVISIAE.GENETICS. VOL. 203. ISSUE 4. P. 1563 -+ 247 59% 0
2 KUENG, S , OPPIKOFER, M , GASSER, SM , (2013) SIR PROTEINS AND THE ASSEMBLY OF SILENT CHROMATIN IN BUDDING YEAST.ANNUAL REVIEW OF GENETICS, VOL 47. VOL. 47. ISSUE . P. 275-+ 169 69% 30
3 GRUNSTEIN, M , GASSER, SM , (2013) EPIGENETICS IN SACCHAROMYCES CEREVISIAE.COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY. VOL. 5. ISSUE 7. P. - 97 71% 15
4 RUSCHE, LN , KIRCHMAIER, AL , RINE, J , (2003) THE ESTABLISHMENT, INHERITANCE, AND FUNCTION OF SILENCED CHROMATIN IN SACCHAROMYCES CEREVISIAE.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 72. ISSUE . P. 481-516 117 50% 480
5 HABER, JE , (2012) MATING-TYPE GENES AND MAT SWITCHING IN SACCHAROMYCES CEREVISIAE.GENETICS. VOL. 191. ISSUE 1. P. 33-64 125 41% 105
6 ARMACHE, KJ , CANZIO, D , NARLIKAR, GJ , KINGSTON, RE , GARLICK, JD , (2011) STRUCTURAL BASIS OF SILENCING: SIR3 BAH DOMAIN IN COMPLEX WITH A NUCLEOSOME AT 3.0 ANGSTROM RESOLUTION.SCIENCE. VOL. 334. ISSUE 6058. P. 977 -982 48 92% 89
7 OPPIKOFER, M , KUENG, S , GASSER, SM , (2013) SIR-NUCLEOSOME INTERACTIONS: STRUCTURE-FUNCTION RELATIONSHIPS IN YEAST SILENT CHROMATIN.GENE. VOL. 527. ISSUE 1. P. 10-25 115 43% 10
8 KUENG, S , TSAI-PFLUGFELDER, M , OPPIKOFER, M , FERREIRA, HC , ROBERTS, E , TSAI, C , ROLOFF, TC , SACK, R , GASSER, SM , (2012) REGULATING REPRESSION: ROLES FOR THE SIR4 N-TERMINUS IN LINKER DNA PROTECTION AND STABILIZATION OF EPIGENETIC STATES.PLOS GENETICS. VOL. 8. ISSUE 5. P. - 71 72% 4
9 LARIN, ML , HARDING, K , WILLIAMS, EC , LIANGA, N , DORE, C , PILON, S , LANGIS, E , YANOFSKY, C , RUDNER, AD , (2015) COMPETITION BETWEEN HETEROCHROMATIC LOCI ALLOWS THE ABUNDANCE OF THE SILENCING PROTEIN, SIR4, TO REGULATE DE NOVO ASSEMBLY OF HETEROCHROMATIN.PLOS GENETICS. VOL. 11. ISSUE 11. P. - 66 65% 2
10 YOUNG, TJ , KIRCHMAIER, AL , (2012) CELL CYCLE REGULATION OF SILENT CHROMATIN FORMATION.BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. VOL. 1819. ISSUE 3-4. P. 303-312 72 57% 4

Classes with closest relation at Level 1


Rank Class id link
1 1312 TELOMERE//TELOMERASE//TRF2
2 14125 USP22//SET1//UBIQUITIN SPECIFIC PROTEASE 22
3 11310 GAL80//GAL4P//GAL4
4 17572 TY1//SECT EUKARYOT TRANSPOSABLE ELEMENTS//TY ELEMENTS
5 5093 HISTONE CHAPERONE//HISTONE VARIANTS//ASF1
6 16690 YEAST//CHROMOSOME XIV//CHROMOSOME XV
7 13617 2 MU M PLASMID//2 MU M CIRCLE//YEP VECTOR
8 18452 IME1//IME2//PROSPORE MEMBRANE
9 3273 NUCLEOSOME POSITIONING//ISWI//NUCLEOSOME
10 7575 HP1//POSITION EFFECT VARIEGATION//HETEROCHROMATIN

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