Class information for:
Level 1: METAGENOMICS//MICROBIOME//HUMAN MICROBIOME

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1803 2479 48.4 86%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
7 4 INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY 1353914
169 3       AGRICULTURE, DAIRY & ANIMAL SCIENCE//POULTRY SCIENCE//BROILER 59415
278 2             PROBIOTICS//MICROBIOTA//GUT MICROBIOTA 19126
1803 1                   METAGENOMICS//MICROBIOME//HUMAN MICROBIOME 2479

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 METAGENOMICS authKW 561068 10% 18% 253
2 MICROBIOME authKW 295322 8% 12% 198
3 HUMAN MICROBIOME authKW 169323 2% 36% 38
4 BIOSCI RD address 101676 1% 49% 17
5 SKIN MICROBIOME authKW 92829 1% 54% 14
6 TCS INNOVAT S address 70043 1% 36% 16
7 METAGENOPOLIS address 66498 0% 60% 9
8 COMPARATIVE METAGENOMICS authKW 62341 0% 56% 9
9 TAXONOMIC CLASSIFICATION authKW 60329 1% 35% 14
10 MICROBIOTA authKW 59903 4% 4% 110

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Microbiology 25215 42% 0% 1046
2 Mathematical & Computational Biology 21343 17% 0% 426
3 Biotechnology & Applied Microbiology 12470 31% 0% 757
4 Biochemical Research Methods 11022 23% 0% 562
5 Genetics & Heredity 1668 12% 0% 297
6 Multidisciplinary Sciences 1337 4% 0% 103
7 Ecology 843 8% 0% 188
8 Biochemistry & Molecular Biology 500 16% 0% 398
9 Evolutionary Biology 204 2% 0% 57
10 Gastroenterology & Hepatology 141 3% 0% 77

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOSCI RD 101676 1% 49% 17
2 TCS INNOVAT S 70043 1% 36% 16
3 METAGENOPOLIS 66498 0% 60% 9
4 DENT CENT OFF 49259 0% 67% 6
5 MICROBIOME INFORMAT THER EUT 43362 0% 39% 9
6 GENOME SCI SYST BIOL 41907 1% 13% 27
7 HOST MICROBIOME INTERACT 40301 0% 55% 6
8 MICROBIAL GENOM METAGEN PROGRAM 39409 0% 80% 4
9 PL BIOL SCI DBIT 35490 0% 41% 7
10 MICROBIOME PROGRAM 34206 0% 56% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MICROBIOME 229729 3% 30% 62
2 ISME JOURNAL 41484 3% 4% 77
3 BIOINFORMATICS 19994 5% 1% 132
4 BMC BIOINFORMATICS 15629 4% 1% 98
5 FRONTIERS IN MICROBIOLOGY 11833 3% 1% 73
6 NATURE MICROBIOLOGY 11532 0% 9% 11
7 PLOS ONE 5688 12% 0% 290
8 GENOME BIOLOGY 5291 1% 1% 36
9 PEERJ 4725 1% 1% 33
10 PLOS COMPUTATIONAL BIOLOGY 4629 2% 1% 42

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 METAGENOMICS 561068 10% 18% 253 Search METAGENOMICS Search METAGENOMICS
2 MICROBIOME 295322 8% 12% 198 Search MICROBIOME Search MICROBIOME
3 HUMAN MICROBIOME 169323 2% 36% 38 Search HUMAN+MICROBIOME Search HUMAN+MICROBIOME
4 SKIN MICROBIOME 92829 1% 54% 14 Search SKIN+MICROBIOME Search SKIN+MICROBIOME
5 COMPARATIVE METAGENOMICS 62341 0% 56% 9 Search COMPARATIVE+METAGENOMICS Search COMPARATIVE+METAGENOMICS
6 TAXONOMIC CLASSIFICATION 60329 1% 35% 14 Search TAXONOMIC+CLASSIFICATION Search TAXONOMIC+CLASSIFICATION
7 MICROBIOTA 59903 4% 4% 110 Search MICROBIOTA Search MICROBIOTA
8 METAGENOME 57067 2% 10% 46 Search METAGENOME Search METAGENOME
9 GUT MICROBIOME 42003 1% 13% 26 Search GUT+MICROBIOME Search GUT+MICROBIOME
10 MOTHUR 40301 0% 55% 6 Search MOTHUR Search MOTHUR

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 NOECKER, C , MCNALLY, CP , ENG, A , BORENSTEIN, E , (2017) HIGH-RESOLUTION CHARACTERIZATION OF THE HUMAN MICROBIOME.TRANSLATIONAL RESEARCH. VOL. 179. ISSUE . P. 7 -23 102 62% 0
2 FU, BC , RANDOLPH, TW , LIM, U , MONROE, KR , CHENG, I , WILKENS, LR , LE MARCHAND, L , HULLAR, MAJ , LAMPE, JW , (2016) CHARACTERIZATION OF THE GUT MICROBIOME IN EPIDEMIOLOGIC STUDIES: THE MULTIETHNIC COHORT EXPERIENCE.ANNALS OF EPIDEMIOLOGY. VOL. 26. ISSUE 5. P. 373 -379 75 69% 3
3 SHARPTON, TJ , (2014) AN INTRODUCTION TO THE ANALYSIS OF SHOTGUN METAGENOMIC DATA.FRONTIERS IN PLANT SCIENCE. VOL. 5. ISSUE . P. - 81 60% 43
4 SEGATA, N , BOERNIGEN, D , TICKLE, TL , MORGAN, XC , GARRETT, WS , HUTTENHOWER, C , (2013) COMPUTATIONAL META'OMICS FOR MICROBIAL COMMUNITY STUDIES.MOLECULAR SYSTEMS BIOLOGY. VOL. 9. ISSUE . P. - 84 54% 74
5 KUCZYNSKI, J , LAUBER, CL , WALTERS, WA , PARFREY, LW , CLEMENTE, JC , GEVERS, D , KNIGHT, R , (2012) EXPERIMENTAL AND ANALYTICAL TOOLS FOR STUDYING THE HUMAN MICROBIOME.NATURE REVIEWS GENETICS. VOL. 13. ISSUE 1. P. 47 -58 64 64% 138
6 PEABODY, MA , VAN ROSSUM, T , LO, R , BRINKMAN, FSL , (2015) EVALUATION OF SHOTGUN METAGENOMICS SEQUENCE CLASSIFICATION METHODS USING IN SILICO AND IN VITRO SIMULATED COMMUNITIES.BMC BIOINFORMATICS. VOL. 16. ISSUE . P. - 61 79% 8
7 MATSEN, FA , (2015) PHYLOGENETICS AND THE HUMAN MICROBIOME.SYSTEMATIC BIOLOGY. VOL. 64. ISSUE 1. P. E26 -E41 96 55% 2
8 NAYFACH, S , POLLARD, KS , (2016) TOWARD ACCURATE AND QUANTITATIVE COMPARATIVE METAGENOMICS.CELL. VOL. 166. ISSUE 5. P. 1103 -1116 67 68% 1
9 JOVEL, J , PATTERSON, J , WANG, W , HOTTE, N , O'KEEFE, S , MITCHEL, T , PERRY, T , KAO, D , MASON, AL , MADSEN, KL , ET AL (2016) CHARACTERIZATION OF THE GUT MICROBIOME USING 16S OR SHOTGUN METAGENOMICS.FRONTIERS IN MICROBIOLOGY. VOL. 7. ISSUE . P. - 67 62% 1
10 GOODRICH, JK , DI RIENZI, SC , POOLE, AC , KOREN, O , WALTERS, WA , CAPORASO, JG , KNIGHT, R , LEY, RE , (2014) CONDUCTING A MICROBIOME STUDY.CELL. VOL. 158. ISSUE 2. P. 250 -262 52 58% 68

Classes with closest relation at Level 1


Rank Class id link
1 20942 LUNG MICROBIOME//CF AIRWAYS MICROBIOL GRP//SAHMRI INFECT IMMUN THEME
2 1386 GUT MICROBIOTA//PREBIOTICS//METAB NUTR GRP
3 21325 MUCHMORE S INFECT DIS//COLIBACTIN//USC 1360
4 19594 METAGENOMIC LIBRARY//FUNCTIONAL METAGENOMICS//METAGENOME
5 29984 BACTEROIDES THETAIOTAOMICRON//POLYSACCHARIDE UTILIZATION LOCI//POLYSACCHARIDE UTILIZATION LOCUS
6 22430 ENVIRONMENTAL DNA//EDNA//METABARCODING
7 1924 SAR11//BACTERIOPLANKTON//BACTERIOPLANKTON COMMUNITY
8 14401 ORAL MICROBIOME//DENT GRP//MICROCOSM PLAQUE
9 24827 METAPROTEOMICS//PROTEIN SIP//SOIL METAPROTEOMICS
10 4307 LUCILLE CASTORI MICROBES INFLAMMAT CANC//MUCOSAL IMMUNOLOGY//MICROBIOTA

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