Class information for:
Level 1: TUBBY//TULP1//ORF PHAGE DISPLAY

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
30188 173 40.8 89%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
642 3       POLYCYSTIC KIDNEY DISEASE//AUTOSOMAL DOMINANT POLYCYSTIC KIDNEY DISEASE//HEDGEHOG 12305
1658 2             HEDGEHOG//GLI//CILIOPATHY 6876
30188 1                   TUBBY//TULP1//ORF PHAGE DISPLAY 173

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TUBBY authKW 2125412 10% 71% 17
2 TULP1 authKW 1525509 6% 79% 11
3 ORF PHAGE DISPLAY authKW 1412045 5% 100% 8
4 UNCONVENTIONAL PROTEIN SECRETION authKW 1270831 7% 60% 12
5 NONCLASSICAL EXPORT authKW 1129633 5% 80% 8
6 PHAGOCYTOSIS LIGAND authKW 1059034 3% 100% 6
7 TUBBY LIKE PROTEINS authKW 706023 2% 100% 4
8 BIOCHEM STEM CELL address 401144 3% 45% 5
9 TUBBY LIKE PROTEIN 1 authKW 397136 2% 75% 3
10 TUB GENE authKW 353011 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Ophthalmology 836 19% 0% 33
2 Genetics & Heredity 288 18% 0% 31
3 Cell Biology 267 21% 0% 37
4 Biochemistry & Molecular Biology 217 32% 0% 55
5 Medicine, Research & Experimental 72 9% 0% 15
6 Biotechnology & Applied Microbiology 36 8% 0% 13
7 Endocrinology & Metabolism 31 6% 0% 11
8 Biophysics 22 5% 0% 9
9 Anatomy & Morphology 22 2% 0% 3
10 Neurosciences 15 8% 0% 14

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOCHEM STEM CELL 401144 3% 45% 5
2 MCKNIGHT VISION OPHTHALMOL 176506 1% 100% 1
3 MICROBIOL IMMUNOLNEUROSCI PROGRAM 176506 1% 100% 1
4 MOL GENET UNS50 11 176506 1% 100% 1
5 RECH SCI 6243 176506 1% 100% 1
6 STRABISMOL OPTHALMOGENET 176506 1% 100% 1
7 STUDY EFFETS HARMFUL AGENTS 176506 1% 100% 1
8 UNIV HEIDELBERG ALLIANZ 176506 1% 100% 1
9 WILMER EYE JOHNS HOPKINS 176506 1% 100% 1
10 CMBI NIJMEGEN 88252 1% 50% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ISLETS 2431 1% 1% 2
2 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 1533 8% 0% 13
3 TRAFFIC 1465 2% 0% 4
4 SCIENCES ET TECHNIQUES DE L ANIMAL DE LABORATOIRE 1101 1% 1% 1
5 ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 1056 6% 0% 10
6 ZEITSCHRIFT FUR MIKROSKOPISCH-ANATOMISCHE FORSCHUNG 853 1% 0% 2
7 MOLECULAR BRAIN RESEARCH 348 2% 0% 3
8 THORACIC CANCER 342 1% 0% 1
9 EMBO REPORTS 323 1% 0% 2
10 NATURE GENETICS 316 2% 0% 3

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TUBBY 2125412 10% 71% 17 Search TUBBY Search TUBBY
2 TULP1 1525509 6% 79% 11 Search TULP1 Search TULP1
3 ORF PHAGE DISPLAY 1412045 5% 100% 8 Search ORF+PHAGE+DISPLAY Search ORF+PHAGE+DISPLAY
4 UNCONVENTIONAL PROTEIN SECRETION 1270831 7% 60% 12 Search UNCONVENTIONAL+PROTEIN+SECRETION Search UNCONVENTIONAL+PROTEIN+SECRETION
5 NONCLASSICAL EXPORT 1129633 5% 80% 8 Search NONCLASSICAL+EXPORT Search NONCLASSICAL+EXPORT
6 PHAGOCYTOSIS LIGAND 1059034 3% 100% 6 Search PHAGOCYTOSIS+LIGAND Search PHAGOCYTOSIS+LIGAND
7 TUBBY LIKE PROTEINS 706023 2% 100% 4 Search TUBBY+LIKE+PROTEINS Search TUBBY+LIKE+PROTEINS
8 TUBBY LIKE PROTEIN 1 397136 2% 75% 3 Search TUBBY+LIKE+PROTEIN+1 Search TUBBY+LIKE+PROTEIN+1
9 TUB GENE 353011 1% 100% 2 Search TUB+GENE Search TUB+GENE
10 TULP 317708 2% 60% 3 Search TULP Search TULP

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 MUKHOPADHYAY, S , JACKSON, PK , (2011) THE TUBBY FAMILY PROTEINS.GENOME BIOLOGY. VOL. 12. ISSUE 6. P. - 36 55% 28
2 XI, QS , PAUER, GJT , TRABOULSI, EI , HAGSTROM, SA , (2006) MUTATION SCREEN OF THE TUB GENE IN PATIENTS WITH RETINITIS PIGMENTOSA AND LEBER CONGENITAL AMAUROSIS.EXPERIMENTAL EYE RESEARCH. VOL. 83. ISSUE 3. P. 569-573 20 100% 2
3 IKEDA, S , IKEDA, A , NAGGERT, JK , NISHINA, PM , (2003) TOWARDS UNDERSTANDING THE FUNCTION OF THE TUBBY GENE FAMILY IN THE RETINA.RETINAL DEGENERATIONS: MECHANISMS AND EXPERIMENTAL THERAPY. VOL. 533. ISSUE . P. 309-314 20 95% 3
4 CARROLL, K , GOMEZ, C , SHAPIRO, L , (2004) TUBBY PROTEINS: THE PLOT THICKENS.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 5. ISSUE 1. P. 55-63 28 54% 59
5 CHEN, SF , TSAI, YC , FAN, SS , (2012) DROSOPHILA KING TUBBY (KTUB) MEDIATES LIGHT-INDUCED RHODOPSIN ENDOCYTOSIS AND RETINAL DEGENERATION.JOURNAL OF BIOMEDICAL SCIENCE. VOL. 19. ISSUE . P. - 26 46% 5
6 CABEROY, NB , LI, W , (2009) UNCONVENTIONAL SECRETION OF TUBBY AND TUBBY-LIKE PROTEIN 1.FEBS LETTERS. VOL. 583. ISSUE 18. P. 3057 -3062 19 68% 8
7 MADDOX, DM , IKEDA, S , IKEDA, A , ZHANG, WD , KREBS, MP , NISHINA, PM , NAGGERT, JK , (2012) AN ALLELE OF MICROTUBULE-ASSOCIATED PROTEIN 1A (MTAP1A) REDUCES PHOTORECEPTOR DEGENERATION IN TULP1 AND TUB MUTANT MICE.INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE. VOL. 53. ISSUE 3. P. 1663-1669 24 49% 8
8 HAGSTROM, SA , WATSON, RF , PAUER, GJT , GROSSMAN, GH , (2012) TULP1 IS INVOLVED IN SPECIFIC PHOTORECEPTOR PROTEIN TRANSPORT PATHWAYS.RETINAL DEGENERATIVE DISEASES. VOL. 723. ISSUE . P. 783-789 18 62% 3
9 XI, QS , PAUER, GJT , BALL, SL , RAYBORN, M , HOLLYFIELD, JG , PEACHEY, NS , CRABB, JW , HAGSTROM, SA , (2007) INTERACTION BETWEEN THE PHOTORECEPTOR-SPECIFIC TUBBY-LIKE PROTEIN 1 AND THE NEURONAL-SPECIFIC GTPASE DYNAMIN-1.INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE. VOL. 48. ISSUE 6. P. 2837-2844 21 55% 21
10 BORMAN, AD , PEARCE, LR , MACKAY, DS , NAGEL-WOLFRUM, K , DAVIDSON, AE , HENDERSON, R , GARG, S , WASEEM, NH , WEBSTER, AR , PLAGNOL, V , ET AL (2014) A HOMOZYGOUS MUTATION IN THE TUB GENE ASSOCIATED WITH RETINAL DYSTROPHY AND OBESITY.HUMAN MUTATION. VOL. 35. ISSUE 3. P. 289 -293 14 61% 12

Classes with closest relation at Level 1


Rank Class id link
1 32237 ALSTROM SYNDROME//ALMS1//ALMS1 GENE
2 4434 RETINITIS PIGMENTOSA//RPGR//AUTOSOMAL DOMINANT RETINITIS PIGMENTOSA
3 9747 LEBER CONGENITAL AMAUROSIS//RPE65//LEBERS CONGENITAL AMAUROSIS
4 19896 U BOX//RING H2//SAUL1
5 13083 GAS6//AXL//TYRO3
6 31081 HEPATOMA DERIVED GROWTH FACTOR//HDGF//HEPATOMA DERIVED GROWTH FACTOR HDGF
7 10225 USHER SYNDROME//USH2A//MYO7A
8 11222 INTERPHOTORECEPTOR MATRIX//PERIPHERIN RDS//OUTER SEGMENT
9 10551 PHAGE DISPLAY//MIMOTOPE//RANDOM PEPTIDE LIBRARY
10 35463 FRAGMIN PROTAMINE MICROPARTICLES//F P MPS//FRAGMIN PROTAMINE MICROPARTICLES F P MPS

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