Class information for:
Level 1: PHOSPHOINOSITIDE//PIKFYVE//SECT MOL SIGNAL TRANSDUCT

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
7540 1357 56.5 92%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
269 3       CELL BIOLOGY//CAVEOLIN 1//CAVEOLAE 44007
447 2             TRAFFIC//ENDOCYTOSIS//CLATHRIN 16170
7540 1                   PHOSPHOINOSITIDE//PIKFYVE//SECT MOL SIGNAL TRANSDUCT 1357

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHOSPHOINOSITIDE authKW 671655 13% 16% 181
2 PIKFYVE authKW 599180 3% 76% 35
3 SECT MOL SIGNAL TRANSDUCT address 271585 2% 46% 26
4 PTDINS5P authKW 226878 1% 92% 11
5 PHOSPHATIDYLINOSITOL 4 KINASE authKW 220395 2% 43% 23
6 FIG4 authKW 216000 1% 80% 12
7 PI 4 KINASE authKW 190120 1% 65% 13
8 YUNIS VARON SYNDROME authKW 182252 1% 90% 9
9 VAC14 authKW 180004 1% 100% 8
10 PHOSPHATIDYLINOSITOL 4 PHOSPHATE 5 KINASE authKW 174558 1% 52% 15

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Cell Biology 8658 41% 0% 557
2 Biochemistry & Molecular Biology 6684 58% 0% 782
3 Biophysics 811 10% 0% 133
4 Biochemical Research Methods 128 4% 0% 57
5 Genetics & Heredity 99 5% 0% 68
6 Developmental Biology 79 2% 0% 26
7 Physiology 26 3% 0% 35
8 Neurosciences 6 4% 0% 56
9 Biology 4 1% 0% 17
10 Mycology 4 0% 0% 5

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SECT MOL SIGNAL TRANSDUCT 271585 2% 46% 26
2 LIPID MEMBRANE BIOL GRP 112502 0% 100% 5
3 CRUK INOSITIDE 93750 0% 83% 5
4 HUMAN INHERITED NEUROPATHIES UNIT 67501 0% 100% 3
5 PROGRAM DEV NEUROSCI 56374 1% 13% 19
6 ONCOGENESIS SIGNAL TRANSDUCT HEMATOPOIET C 45001 0% 100% 2
7 MOL SCI PROGRAM 43264 0% 38% 5
8 PLASMA MEMBRANE RECEPTORS 40498 0% 60% 3
9 INOSITIDE 39218 1% 12% 15
10 WADHWANI 33748 0% 50% 3

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY OF THE CELL 6696 4% 1% 50
2 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 6534 2% 1% 28
3 JOURNAL OF BIOLOGICAL CHEMISTRY 4388 13% 0% 175
4 BIOCHEMICAL SOCIETY SYMPOSIUM 3896 1% 2% 7
5 TRAFFIC 3358 1% 1% 17
6 JOURNAL OF CELL SCIENCE 2841 3% 0% 41
7 JOURNAL OF CELL BIOLOGY 2551 3% 0% 43
8 BIOCHEMICAL JOURNAL 2516 4% 0% 58
9 CURRENT BIOLOGY 1674 2% 0% 26
10 SCIENCE SIGNALING 1164 1% 1% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PHOSPHOINOSITIDE 671655 13% 16% 181 Search PHOSPHOINOSITIDE Search PHOSPHOINOSITIDE
2 PIKFYVE 599180 3% 76% 35 Search PIKFYVE Search PIKFYVE
3 PTDINS5P 226878 1% 92% 11 Search PTDINS5P Search PTDINS5P
4 PHOSPHATIDYLINOSITOL 4 KINASE 220395 2% 43% 23 Search PHOSPHATIDYLINOSITOL+4+KINASE Search PHOSPHATIDYLINOSITOL+4+KINASE
5 FIG4 216000 1% 80% 12 Search FIG4 Search FIG4
6 PI 4 KINASE 190120 1% 65% 13 Search PI+4+KINASE Search PI+4+KINASE
7 YUNIS VARON SYNDROME 182252 1% 90% 9 Search YUNIS+VARON+SYNDROME Search YUNIS+VARON+SYNDROME
8 VAC14 180004 1% 100% 8 Search VAC14 Search VAC14
9 PHOSPHATIDYLINOSITOL 4 PHOSPHATE 5 KINASE 174558 1% 52% 15 Search PHOSPHATIDYLINOSITOL+4+PHOSPHATE+5+KINASE Search PHOSPHATIDYLINOSITOL+4+PHOSPHATE+5+KINASE
10 FAB1 165682 1% 82% 9 Search FAB1 Search FAB1

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 BALLA, T , (2013) PHOSPHOINOSITIDES: TINY LIPIDS WITH GIANT IMPACT ON CELL REGULATION.PHYSIOLOGICAL REVIEWS. VOL. 93. ISSUE 3. P. 1019 -1137 322 19% 228
2 MCCARTNEY, AJ , ZHANG, YL , WEISMAN, LS , (2014) PHOSPHATIDYLINOSITOL 3,5-BISPHOSPHATE: LOW ABUNDANCE, HIGH SIGNIFICANCE.BIOESSAYS. VOL. 36. ISSUE 1. P. 52-64 89 79% 35
3 SHISHEVA, A , (2013) PTDINS5P: NEWS AND VIEWS OF ITS APPEARANCE, DISAPPEARANCE AND DEEDS.ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. VOL. 538. ISSUE 2. P. 171 -180 96 79% 9
4 SASAKI, T , TAKASUGA, S , SASAKI, J , KOFUJI, S , EGUCHI, S , YAMAZAKI, M , SUZUKI, A , (2009) MAMMALIAN PHOSPHOINOSITIDE KINASES AND PHOSPHATASES.PROGRESS IN LIPID RESEARCH. VOL. 48. ISSUE 6. P. 307 -343 165 35% 63
5 KWIATKOWSKA, K , (2010) ONE LIPID, MULTIPLE FUNCTIONS: HOW VARIOUS POOLS OF PI(4,5)P-2 ARE CREATED IN THE PLASMA MEMBRANE.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 67. ISSUE 23. P. 3927 -3946 100 58% 43
6 SHISHEVA, A , SBRISSA, D , IKONOMOV, O , (2015) PLENTIFUL PTDINS5P FROM SCANTY PTDINS(3,5)P-2 OR FROM AMPLE PTDINS? PIKFYVE-DEPENDENT MODELS: EVIDENCE AND SPECULATION.BIOESSAYS. VOL. 37. ISSUE 3. P. 267 -277 69 81% 2
7 VIAUD, J , BOAL, F , TRONCHERE, H , GAITS-IACOVONI, F , PAYRASTRE, B , (2014) PHOSPHATIDYLINOSITOL 5-PHOSPHATE: A NUCLEAR STRESS LIPID AND A TUNER OF MEMBRANES AND CYTOSKELETON DYNAMICS.BIOESSAYS. VOL. 36. ISSUE 3. P. 260 -272 70 77% 9
8 SHISHEVA, A , (2012) PIKFYVE AND ITS LIPID PRODUCTS IN HEALTH AND IN SICKNESS.PHOSPHOINOSITIDES AND DISEASE. VOL. 362. ISSUE . P. 127-162 85 62% 15
9 HO, CY , ALGHAMDI, TA , BOTELHO, RJ , (2012) PHOSPHATIDYLINOSITOL-3,5-BISPHOSPHATE: NO LONGER THE POOR PIP2.TRAFFIC. VOL. 13. ISSUE 1. P. 1-8 62 78% 36
10 ZOLOV, SN , BRIDGES, D , ZHANG, YL , LEE, WW , RIEHLE, E , VERMA, R , LENK, GM , CONVERSO-BARAN, K , WEIDE, T , ALBIN, RL , ET AL (2012) IN VIVO, PIKFYVE GENERATES PI(3,5)P-2, WHICH SERVES AS BOTH A SIGNALING LIPID AND THE MAJOR PRECURSOR FOR PI5P.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 109. ISSUE 43. P. 17472 -17477 44 94% 45

Classes with closest relation at Level 1


Rank Class id link
1 25863 LOWE SYNDROME//OCULOCEREBRORENAL SYNDROME//OCRL1
2 36689 GOLPH3//GOLGI PHOSPHOPROTEIN 3//GOLGI PHOSPHOPROTEIN 3 GOLPH3
3 17837 RETROMER//SORTING NEXIN//VPS35
4 20907 OXYSTEROL BINDING PROTEIN//MEMBRANE CONTACT SITES//OSBP
5 14683 SHIP2//SHIP1//DOK
6 5678 PI3K GAMMA//PHOSPHOINOSITIDE 3 KINASE//P110 DELTA
7 10752 PHOSPHATIDIC ACID//PHOSPHOLIPASE D//SECT PLANT PHYSIOL
8 16564 CELLULAR SIGNALLING//DNA BOUND LIPIDS//PI PLCBETA1
9 12497 STEROL CARRIER PROTEIN 2//PHOSPHATIDYLINOSITOL TRANSFER PROTEIN//GLYCOLIPID TRANSFER PROTEIN
10 18529 MACROPINOCYTOSIS//PHAGOSOME//RECYCLING FROM PHAGOSOMES

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