Class information for:
Level 1: RIBOSOME PROFILING//UORF//SCANNING MODEL

Basic class information

Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.



Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
535 3       GLUCOCORTICOID RECEPTOR//EIF4E//TRANSLATION INITIATION 19975
1446 2             EIF4E//TRANSLATION INITIATION//IRES 8099
13598 1                   RIBOSOME PROFILING//UORF//SCANNING MODEL 856

Terms with highest relevance score



rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RIBOSOME PROFILING authKW 616788 4% 49% 34
2 UORF authKW 357829 3% 36% 27
3 SCANNING MODEL authKW 235627 1% 80% 8
4 AUG CONTEXT authKW 165675 1% 75% 6
5 UPSTREAM OPEN READING FRAME authKW 147249 2% 29% 14
6 SMALL OPEN READING FRAMES authKW 115050 1% 63% 5
7 ARABIDOPSIS THALIANA T87 authKW 110452 0% 100% 3
8 KOZAK MOTIF authKW 110452 0% 100% 3
9 NON AUG INITIATION authKW 102266 1% 56% 5
10 RIBO SEQ authKW 102266 1% 56% 5

Web of Science journal categories



chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Biochemistry & Molecular Biology 4583 60% 0% 510
2 Cell Biology 1354 22% 0% 185
3 Genetics & Heredity 1302 17% 0% 147
4 Biotechnology & Applied Microbiology 1298 18% 0% 150
5 Biochemical Research Methods 715 10% 0% 89
6 Mathematical & Computational Biology 509 5% 0% 41
7 Plant Sciences 320 10% 0% 85
8 Biophysics 151 6% 0% 50
9 Biology 99 4% 0% 32
10 Virology 95 3% 0% 26

Address terms



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 COLUMBIA UNIV MD PHD PROGRAM 73634 0% 100% 2
2 PFIZER MED CHEM 73634 0% 100% 2
3 BACTERIAL INFECTSHINJUKU KU 36817 0% 100% 1
4 BEIJER RUDBECK 36817 0% 100% 1
5 BELGIUM CFP 36817 0% 100% 1
6 BIOBIX MATH MODELLING STAT BIOINFORMAT 36817 0% 100% 1
7 BIOCHEM BOELELAAN 1083 36817 0% 100% 1
8 BIOENGN BIOTECHNOL STATE ETHN AFFAIRS C 36817 0% 100% 1
9 BIOINFORMAT GHENT BIG N2N 36817 0% 100% 1
10 CBIIGBMCCNRSUMR 7104U964 36817 0% 100% 1

Journals



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PLANT BIOTECHNOLOGY 5270 1% 1% 10
2 NUCLEIC ACIDS RESEARCH 4503 8% 0% 71
3 MOLECULAR SYSTEMS BIOLOGY 3752 1% 1% 9
4 RNA 2043 2% 0% 13
5 CELL SYSTEMS 1932 0% 2% 3
6 GENOME RESEARCH 1828 2% 0% 13
7 MOLECULAR AND CELLULAR BIOLOGY 1747 4% 0% 33
8 WILEY INTERDISCIPLINARY REVIEWS-RNA 1465 0% 1% 4
9 MOLECULAR & CELLULAR PROTEOMICS 1369 1% 0% 11
10 GENOME BIOLOGY 1172 1% 0% 10

Author Key Words



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 RIBOSOME PROFILING 616788 4% 49% 34 Search RIBOSOME+PROFILING Search RIBOSOME+PROFILING
2 UORF 357829 3% 36% 27 Search UORF Search UORF
3 SCANNING MODEL 235627 1% 80% 8 Search SCANNING+MODEL Search SCANNING+MODEL
4 AUG CONTEXT 165675 1% 75% 6 Search AUG+CONTEXT Search AUG+CONTEXT
5 UPSTREAM OPEN READING FRAME 147249 2% 29% 14 Search UPSTREAM+OPEN+READING+FRAME Search UPSTREAM+OPEN+READING+FRAME
6 SMALL OPEN READING FRAMES 115050 1% 63% 5 Search SMALL+OPEN+READING+FRAMES Search SMALL+OPEN+READING+FRAMES
7 ARABIDOPSIS THALIANA T87 110452 0% 100% 3 Search ARABIDOPSIS+THALIANA+T87 Search ARABIDOPSIS+THALIANA+T87
8 KOZAK MOTIF 110452 0% 100% 3 Search KOZAK+MOTIF Search KOZAK+MOTIF
9 NON AUG INITIATION 102266 1% 56% 5 Search NON+AUG+INITIATION Search NON+AUG+INITIATION
10 RIBO SEQ 102266 1% 56% 5 Search RIBO+SEQ Search RIBO+SEQ

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1



rank cluster_id2 link
1 6372 IRES//INTERNAL RIBOSOME ENTRY SITE//INTERNAL RIBOSOME ENTRY SITE IRES
2 6536 EIF3//GENE REGULAT DEV//TRANSLATION INITIATION
3 20001 TRIGGER FACTOR//NASCENT CHAIN//COTRANSLATIONAL FOLDING
4 35939 P11//S100A10//RIBOTAG
5 4504 EIF4E//EIF4F//CAP ANALOG
6 4230 CODON USAGE//CODON USAGE BIAS//SYNONYMOUS CODON USAGE
7 10104 NMD//UPF1//NONSENSE MEDIATED MRNA DECAY
8 14698 CYTOPLASMIC POLYADENYLATION//CPEB//POLYA BINDING PROTEIN
9 28288 TRIPEPTIDYL PEPTIDASE II//TPPII//DALIS
10 10203 SHINE DALGARNO SEQUENCE//LEADERLESS MRNA//TRANSLATION INITIATION

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