Class information for:
Level 1: NMD//UPF1//NONSENSE MEDIATED MRNA DECAY

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
55 3       CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY//CHROMATIN 94586
314 2             PRE MRNA SPLICING//RNA BINDING PROTEIN//SPLICEOSOME 18650
10104 1                   NMD//UPF1//NONSENSE MEDIATED MRNA DECAY 1123

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 NMD authKW 1420623 8% 56% 90
2 UPF1 authKW 1150115 4% 82% 50
3 NONSENSE MEDIATED MRNA DECAY authKW 1096991 7% 48% 82
4 EXON JUNCTION COMPLEX authKW 624693 3% 70% 32
5 PREMATURE TERMINATION CODON authKW 624444 4% 51% 44
6 NONSENSE MEDIATED DECAY authKW 606101 5% 40% 54
7 EJC authKW 336747 2% 67% 18
8 Y14 authKW 323548 1% 82% 14
9 MRNA SURVEILLANCE authKW 317311 2% 54% 21
10 NONSENSE MEDIATED MRNA DECAY NMD authKW 303069 2% 60% 18

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Cell Biology 6338 39% 0% 435
2 Biochemistry & Molecular Biology 5952 59% 0% 666
3 Genetics & Heredity 2080 19% 0% 211
4 Developmental Biology 515 5% 0% 52
5 Biophysics 209 6% 0% 67
6 Medicine, Research & Experimental 169 6% 0% 65
7 Biotechnology & Applied Microbiology 46 4% 0% 48
8 Mycology 29 1% 0% 9
9 Biology 24 2% 0% 23
10 Plant Sciences 20 4% 0% 40

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 EDITH JOSEPH FI ER ENZYME INHIBITORS 289639 2% 61% 17
2 MOL MED PARTNERSHIP UNIT 129054 2% 20% 23
3 PEDIAT ONCOL HEMATOL IMMUNOL 72323 2% 9% 28
4 CREAT INITIAT MOL BIOL TRANSLAT 63141 0% 75% 3
5 EXPT THER EUT INTERDISCIPLINARY ONCOL 56126 0% 100% 2
6 UMR8197 46 56126 0% 100% 2
7 MED MOLEC GENET MICROBIOL 45913 1% 27% 6
8 GREGORY FLEMING JAMES CYST FIBROSIS 42881 2% 9% 17
9 UMR IMAGING BRAIN 37416 0% 67% 2
10 MICROBIOL MOL BIODEF 31567 0% 38% 3

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RNA 22304 4% 2% 49
2 RNA-A PUBLICATION OF THE RNA SOCIETY 11207 2% 2% 19
3 NATURE STRUCTURAL & MOLECULAR BIOLOGY 8479 2% 1% 26
4 GENES & DEVELOPMENT 5901 4% 1% 40
5 MOLECULAR CELL 5358 3% 1% 33
6 MOLECULAR AND CELLULAR BIOLOGY 4008 5% 0% 57
7 WILEY INTERDISCIPLINARY REVIEWS-RNA 2514 1% 2% 6
8 NUCLEIC ACIDS RESEARCH 2409 5% 0% 60
9 EMBO JOURNAL 2057 3% 0% 36
10 RNA BIOLOGY 1806 1% 1% 8

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 NMD 1420623 8% 56% 90 Search NMD Search NMD
2 UPF1 1150115 4% 82% 50 Search UPF1 Search UPF1
3 NONSENSE MEDIATED MRNA DECAY 1096991 7% 48% 82 Search NONSENSE+MEDIATED+MRNA+DECAY Search NONSENSE+MEDIATED+MRNA+DECAY
4 EXON JUNCTION COMPLEX 624693 3% 70% 32 Search EXON+JUNCTION+COMPLEX Search EXON+JUNCTION+COMPLEX
5 PREMATURE TERMINATION CODON 624444 4% 51% 44 Search PREMATURE+TERMINATION+CODON Search PREMATURE+TERMINATION+CODON
6 NONSENSE MEDIATED DECAY 606101 5% 40% 54 Search NONSENSE+MEDIATED+DECAY Search NONSENSE+MEDIATED+DECAY
7 EJC 336747 2% 67% 18 Search EJC Search EJC
8 Y14 323548 1% 82% 14 Search Y14 Search Y14
9 MRNA SURVEILLANCE 317311 2% 54% 21 Search MRNA+SURVEILLANCE Search MRNA+SURVEILLANCE
10 NONSENSE MEDIATED MRNA DECAY NMD 303069 2% 60% 18 Search NONSENSE+MEDIATED+MRNA+DECAY+NMD Search NONSENSE+MEDIATED+MRNA+DECAY+NMD

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 7397 STRESS GRANULES//P BODIES//DECAPPING
2 21452 MRNA EXPORT//THO COMPLEX//ORF57
3 31063 INTRON MEDIATED ENHANCEMENT//IME//IMETER
4 16847 MRNP BIOGENESIS METAB//RRP6//DIS3
5 12001 FRAMESHIFT//RIBOSOMAL FRAMESHIFTING//RNA PSEUDOKNOT
6 996 SR PROTEINS//ALTERNATIVE SPLICING//SRPK1
7 13598 RIBOSOME PROFILING//UORF//SCANNING MODEL
8 12803 RNA HELICASE//DEAD BOX//DEAD BOX PROTEIN
9 18104 TMRNA//TRANS TRANSLATION//SMPB
10 7643 SUP35//TRANSLATION TERMINATION//YEAST PRION

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