Class information for:
Level 2: PRE MRNA SPLICING//RNA BINDING PROTEIN//SPLICEOSOME

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
55 3       CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY//CHROMATIN 94586
314 2             PRE MRNA SPLICING//RNA BINDING PROTEIN//SPLICEOSOME 18650
996 1                   SR PROTEINS//ALTERNATIVE SPLICING//SRPK1 2947
2285 1                   PRE MRNA SPLICING//SPLICEOSOME//SNRNP 2329
3371 1                   HUR//AU RICH ELEMENT//TRISTETRAPROLIN 2031
4854 1                   P TEFB//CDK9//RNA POLYMERASE II 1740
7397 1                   STRESS GRANULES//P BODIES//DECAPPING 1398
8341 1                   POLYADENYLATION//ALTERNATIVE POLYADENYLATION//POLYA POLYMERASE 1292
10104 1                   NMD//UPF1//NONSENSE MEDIATED MRNA DECAY 1123
12803 1                   RNA HELICASE//DEAD BOX//DEAD BOX PROTEIN 910
14537 1                   HNRNP B1//HNRNP A2 B1//U1A 793
14698 1                   CYTOPLASMIC POLYADENYLATION//CPEB//POLYA BINDING PROTEIN 783
16847 1                   MRNP BIOGENESIS METAB//RRP6//DIS3 658
17375 1                   INTERACTION PROPENSITY//DNA BINDING RESIDUES//RNA BINDING RESIDUES 631
21432 1                   HNRNP K//VIGILIN//HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 443
21452 1                   MRNA EXPORT//THO COMPLEX//ORF57 442
27586 1                   PUMILIO//PUF PROTEINS//PUF DOMAIN 246
29599 1                   MCPIP1//MCPIP//ZC3H12A 200
31063 1                   INTRON MEDIATED ENHANCEMENT//IME//IMETER 173
32033 1                   HERBOXIDIENE//FR901464//SPLICEOSTATIN A 157
32353 1                   P54NRB//POLYPYRIMIDINE TRACT BINDING PROTEIN ASSOCIATED SPLICING FACTOR//NONO 153
36071 1                   RBM5//RBM10//LUCA 15 103
36444 1                   FUBP1//FUSE BINDING PROTEIN//C MYC SUPPRESSOR 98

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PRE MRNA SPLICING authKW 360633 2% 66% 322
2 RNA BINDING PROTEIN authKW 237742 3% 28% 504
3 SPLICEOSOME authKW 236222 1% 61% 231
4 SR PROTEINS authKW 201087 1% 69% 174
5 RNA journal 199043 3% 20% 597
6 ALTERNATIVE SPLICING authKW 190477 4% 15% 743
7 HUR authKW 181020 1% 64% 168
8 MRNA DECAY authKW 179871 1% 58% 183
9 POLYADENYLATION authKW 170660 1% 43% 236
10 RNA HELICASE authKW 157821 1% 52% 181

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Biochemistry & Molecular Biology 110611 62% 1% 11641
2 Cell Biology 87949 36% 1% 6641
3 Genetics & Heredity 16836 14% 1% 2536
4 Developmental Biology 7719 4% 1% 824
5 Biophysics 4022 6% 0% 1181
6 Biotechnology & Applied Microbiology 1604 5% 0% 1014
7 Biochemical Research Methods 1559 4% 0% 747
8 Mathematical & Computational Biology 1116 2% 0% 326
9 Virology 929 2% 0% 414
10 Oncology 534 5% 0% 947

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 MRNP BIOGENESIS METAB 79723 0% 75% 63
2 RNA MOL BIOL 46303 1% 24% 114
3 MOL BIOL RNA 27481 0% 28% 58
4 PROGRAM BIOMOL 19982 0% 79% 15
5 HOWARD HUGHES MED 19299 4% 2% 677
6 EDITH JOSEPH FI ER ENZYME INHIBITORS 17409 0% 61% 17
7 CELLULAR BIOCHEM 15893 1% 8% 118
8 BIOANALYT MASS SPE OMETRY GRP 15854 0% 27% 35
9 HELMHOLTZ JR GRP POSTTRANSCRIPT CONTROL GENE 15841 0% 72% 13
10 GENOM PHYSIOL 15185 0% 75% 12

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RNA 199043 3% 20% 597
2 MOLECULAR AND CELLULAR BIOLOGY 93915 6% 5% 1122
3 NUCLEIC ACIDS RESEARCH 77671 7% 3% 1379
4 RNA-A PUBLICATION OF THE RNA SOCIETY 63134 1% 20% 184
5 GENES & DEVELOPMENT 53505 3% 7% 492
6 MOLECULAR CELL 52316 2% 7% 421
7 WILEY INTERDISCIPLINARY REVIEWS-RNA 51832 1% 28% 111
8 RNA BIOLOGY 28264 1% 13% 129
9 NATURE STRUCTURAL & MOLECULAR BIOLOGY 23721 1% 8% 178
10 EMBO JOURNAL 22306 3% 3% 485

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PRE MRNA SPLICING 360633 2% 66% 322 Search PRE+MRNA+SPLICING Search PRE+MRNA+SPLICING
2 RNA BINDING PROTEIN 237742 3% 28% 504 Search RNA+BINDING+PROTEIN Search RNA+BINDING+PROTEIN
3 SPLICEOSOME 236222 1% 61% 231 Search SPLICEOSOME Search SPLICEOSOME
4 SR PROTEINS 201087 1% 69% 174 Search SR+PROTEINS Search SR+PROTEINS
5 ALTERNATIVE SPLICING 190477 4% 15% 743 Search ALTERNATIVE+SPLICING Search ALTERNATIVE+SPLICING
6 HUR 181020 1% 64% 168 Search HUR Search HUR
7 MRNA DECAY 179871 1% 58% 183 Search MRNA+DECAY Search MRNA+DECAY
8 POLYADENYLATION 170660 1% 43% 236 Search POLYADENYLATION Search POLYADENYLATION
9 RNA HELICASE 157821 1% 52% 181 Search RNA+HELICASE Search RNA+HELICASE
10 SPLICING 150680 2% 22% 409 Search SPLICING Search SPLICING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 2688 NUCLEAR PORE COMPLEX//NUCLEOPORIN//NUCLEAR TRANSPORT
2 1446 EIF4E//TRANSLATION INITIATION//IRES
3 1262 NUCLEOLUS//RIBOSOME BIOGENESIS//RIBOSOMAL PROTEIN
4 1241 RNA POLYMERASE//TFIID//RNA POLYMERASE II
5 1910 LONG NONCODING RNAS//LNCRNA//LONG NONCODING RNA
6 2136 FRAGILE X SYNDROME//FRAGILE X//FMR1
7 1098 AMINOACYL TRNA SYNTHETASE//RNASE P//TRNA
8 2788 SPINAL MUSCULAR ATROPHY//ALEXANDER DISEASE//SMN
9 3563 DNA LIGASE//DEHYDRON//NAD DEPENDENT DNA LIGASE
10 1836 CHROMOSOME TERRITORY//CHIP SEQ//NUCLEAR ARCHITECTURE

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