Class information for:
Level 2: CHROMOSOME TERRITORY//CHIP SEQ//NUCLEAR ARCHITECTURE

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
55 3       CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY//CHROMATIN 94586
1836 2             CHROMOSOME TERRITORY//CHIP SEQ//NUCLEAR ARCHITECTURE 6503
2027 1                   MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING 2420
4428 1                   CHROMOSOME CONFORMATION CAPTURE//HI C//NUCL DYNAM PROGRAMME 1820
8947 1                   CHROMOSOME TERRITORY//NUCLEAR ARCHITECTURE//3D FISH 1232
12574 1                   CHIP SEQ//CHROMATIN IMMUNOPRECIPITATION//PEAK CALLING 926
35939 1                   P11//S100A10//RIBOTAG 105

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 CHROMOSOME TERRITORY authKW 351663 2% 73% 99
2 CHIP SEQ authKW 196312 2% 30% 136
3 NUCLEAR ARCHITECTURE authKW 186277 1% 42% 92
4 TRANSCRIPTION FACTOR BINDING SITE authKW 168628 1% 38% 92
5 MOTIF DISCOVERY authKW 157351 1% 57% 57
6 NUCLEAR ORGANIZATION authKW 121100 1% 30% 84
7 CHROMOSOME CONFORMATION CAPTURE authKW 115659 1% 60% 40
8 BIOINFORMATICS journal 104436 8% 4% 493
9 HI C authKW 101798 1% 62% 34
10 NUCL DYNAM PROGRAMME address 94937 0% 70% 28

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 66863 19% 1% 1227
2 Genetics & Heredity 31649 29% 0% 1916
3 Biochemical Research Methods 27726 22% 0% 1442
4 Biotechnology & Applied Microbiology 27069 28% 0% 1817
5 Biochemistry & Molecular Biology 12276 38% 0% 2445
6 Cell Biology 10612 22% 0% 1425
7 Computer Science, Interdisciplinary Applications 466 3% 0% 192
8 Developmental Biology 462 2% 0% 134
9 Statistics & Probability 434 3% 0% 165
10 Biology 363 3% 0% 184

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 NUCL DYNAM PROGRAMME 94937 0% 70% 28
2 PROGRAM SYST BIOL 42289 0% 29% 30
3 OPT MICROSCOPY 34598 0% 71% 10
4 GENOME FUNCT GRP 32696 0% 75% 9
5 UKG 32696 0% 75% 9
6 BIOINFORMAT GENOMES EAUX BIGRE 29227 0% 46% 13
7 GENOME ARCHITECTURE 28182 0% 73% 8
8 MANITOBA CELL BIOL 24947 1% 11% 45
9 PROGRAM COMPUTAT BIOL BIOINFORMAT 24941 1% 11% 48
10 VERTEBRATE GENOM GRP 24223 0% 100% 5

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 104436 8% 4% 493
2 GENOME RESEARCH 63874 3% 6% 211
3 NUCLEIC ACIDS RESEARCH 46877 10% 2% 630
4 BMC BIOINFORMATICS 43695 4% 3% 267
5 GENOME BIOLOGY 38348 2% 5% 157
6 BMC GENOMICS 15587 3% 2% 182
7 CHROMOSOME RESEARCH 15432 1% 4% 73
8 EPIGENETICS & CHROMATIN 14403 0% 10% 31
9 JOURNAL OF COMPUTATIONAL BIOLOGY 12542 1% 4% 65
10 CURRENT OPINION IN GENETICS & DEVELOPMENT 11308 1% 3% 69

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 CHROMOSOME TERRITORY 351663 2% 73% 99 Search CHROMOSOME+TERRITORY Search CHROMOSOME+TERRITORY
2 CHIP SEQ 196312 2% 30% 136 Search CHIP+SEQ Search CHIP+SEQ
3 NUCLEAR ARCHITECTURE 186277 1% 42% 92 Search NUCLEAR+ARCHITECTURE Search NUCLEAR+ARCHITECTURE
4 TRANSCRIPTION FACTOR BINDING SITE 168628 1% 38% 92 Search TRANSCRIPTION+FACTOR+BINDING+SITE Search TRANSCRIPTION+FACTOR+BINDING+SITE
5 MOTIF DISCOVERY 157351 1% 57% 57 Search MOTIF+DISCOVERY Search MOTIF+DISCOVERY
6 NUCLEAR ORGANIZATION 121100 1% 30% 84 Search NUCLEAR+ORGANIZATION Search NUCLEAR+ORGANIZATION
7 CHROMOSOME CONFORMATION CAPTURE 115659 1% 60% 40 Search CHROMOSOME+CONFORMATION+CAPTURE Search CHROMOSOME+CONFORMATION+CAPTURE
8 HI C 101798 1% 62% 34 Search HI+C Search HI+C
9 MOTIF FINDING 79713 0% 69% 24 Search MOTIF+FINDING Search MOTIF+FINDING
10 3D FISH 69999 0% 85% 17 Search 3D+FISH Search 3D+FISH

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 747 BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS
2 2703 6 MERCAPTOPURINE//THIOPURINE METHYLTRANSFERASE//AZATHIOPRINE
3 3113 NUCLEAR MATRIX//SATB1//MATRIX ATTACHMENT REGION
4 1697 ETS 1//PU1//IKAROS
5 2506 LAMIN//NUCLEAR ENVELOPE//LAMINOPATHY
6 991 EZH2//POLYCOMB//HISTONE DEMETHYLASE
7 822 NUCLEOSOME//CHROMATIN//SWI SNF
8 868 PIRNA//TRANSPOSABLE ELEMENTS//RETROTRANSPOSON
9 1910 LONG NONCODING RNAS//LNCRNA//LONG NONCODING RNA
10 1241 RNA POLYMERASE//TFIID//RNA POLYMERASE II

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