Class information for:
Level 2: BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
747 2             BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS 12946
1990 1                   MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES 2436
2086 1                   VARIANT CALLING//NEXT GENERATION SEQUENCING//BIOINFORMATICS 2397
6435 1                   RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY 1513
12286 1                   METAGENOMICS//BIOSCI RD//TCS INNOVAT S 947
12337 1                   GENE PREDICTION//GENE FINDING//GENE RECOGNITION 944
12440 1                   GENOME ASSEMBLY//GENOME FINISHING//MINION 936
14767 1                   EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE 779
16145 1                   BIOKNOWLEDGE SYST//CARDIOVASC MOLEC CARDIOL//GENOME KNOWLEDGE DISCOVERY SYST 697
18663 1                   TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA 565
18698 1                   SERIAL ANALYSIS OF GENE EXPRESSION//SAGE//SERIAL ANALYSIS OF GENE EXPRESSION SAGE 564
21424 1                   MKIAA//GENOME EXPLORAT GRPTSURUMI KU//GENOME EXPLORAT GRP 443
24276 1                   PERIODIC SELECTION//16S 23S RIBOSOMAL SPACER//ADAPTING POPULATIONS 340
32458 1                   DNA SEQUENCE COMPRESSION//REFERENCE BASED COMPRESSION//REFERENTIAL COMPRESSION 151
34166 1                   CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC 128
35905 1                   ANTIMICROBIAL ISTANCE MONITORING ARMOR P//ASSEMBLY BASED APPROACH//BACTERIAL WHOLE GENOME SEQUENCING 106

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS journal 469145 11% 13% 1472
2 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 267388 27% 3% 3444
3 BMC BIOINFORMATICS journal 189986 6% 10% 784
4 NEXT GENERATION SEQUENCING authKW 144363 4% 11% 553
5 MULTIPLE SEQUENCE ALIGNMENT authKW 138387 1% 40% 142
6 BIOTECHNOLOGY & APPLIED MICROBIOLOGY WoSSC 115224 40% 1% 5190
7 SEQUENCE ALIGNMENT authKW 114354 1% 27% 175
8 RNA SEQ authKW 106618 3% 12% 358
9 COMPUTER APPLICATIONS IN THE BIOSCIENCES journal 99376 1% 21% 193
10 BIOCHEMICAL RESEARCH METHODS WoSSC 95750 29% 1% 3738

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 267388 27% 3% 3444
2 Biotechnology & Applied Microbiology 115224 40% 1% 5190
3 Biochemical Research Methods 95750 29% 1% 3738
4 Genetics & Heredity 49675 26% 1% 3410
5 Biochemistry & Molecular Biology 11450 27% 0% 3555
6 Computer Science, Interdisciplinary Applications 3797 5% 0% 680
7 Statistics & Probability 1808 3% 0% 442
8 Evolutionary Biology 1248 2% 0% 318
9 Computer Science, Theory & Methods 913 3% 0% 387
10 Microbiology 607 4% 0% 565

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMAT 31124 3% 3% 439
2 EMBL OUTSTN 26022 0% 21% 50
3 GENOME SCI 22978 2% 4% 228
4 BIOINFORMAT COMPUTAT BIOL 22322 1% 7% 131
5 BIOSCI RD 21283 0% 49% 18
6 GRP BIOINFORMAT NG4 20546 0% 65% 13
7 BIOTECHNOL INFORMAT 20478 1% 6% 138
8 SIMONS QUANTITAT BIOL 20189 0% 46% 18
9 COMP SCI 17120 9% 1% 1108
10 HKU BGI BIOINFORMAT ALGORITHMS CORE TECHNOL 15151 0% 69% 9

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 469145 11% 13% 1472
2 BMC BIOINFORMATICS 189986 6% 10% 784
3 COMPUTER APPLICATIONS IN THE BIOSCIENCES 99376 1% 21% 193
4 GENOME RESEARCH 89690 3% 11% 353
5 BMC GENOMICS 66881 4% 5% 530
6 JOURNAL OF COMPUTATIONAL BIOLOGY 61676 2% 13% 203
7 NUCLEIC ACIDS RESEARCH 60254 8% 3% 1011
8 GENOME BIOLOGY 38735 2% 7% 223
9 GIGASCIENCE 29445 0% 24% 50
10 BRIEFINGS IN BIOINFORMATICS 19436 1% 10% 78

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 NEXT GENERATION SEQUENCING 144363 4% 11% 553 Search NEXT+GENERATION+SEQUENCING Search NEXT+GENERATION+SEQUENCING
2 MULTIPLE SEQUENCE ALIGNMENT 138387 1% 40% 142 Search MULTIPLE+SEQUENCE+ALIGNMENT Search MULTIPLE+SEQUENCE+ALIGNMENT
3 SEQUENCE ALIGNMENT 114354 1% 27% 175 Search SEQUENCE+ALIGNMENT Search SEQUENCE+ALIGNMENT
4 RNA SEQ 106618 3% 12% 358 Search RNA+SEQ Search RNA+SEQ
5 VARIANT CALLING 76297 0% 78% 40 Search VARIANT+CALLING Search VARIANT+CALLING
6 GENOME ASSEMBLY 69621 1% 41% 70 Search GENOME+ASSEMBLY Search GENOME+ASSEMBLY
7 METAGENOMICS 63703 2% 13% 207 Search METAGENOMICS Search METAGENOMICS
8 DE NOVO ASSEMBLY 49596 1% 28% 74 Search DE+NOVO+ASSEMBLY Search DE+NOVO+ASSEMBLY
9 TRANS SPLICING 45375 1% 26% 73 Search TRANS+SPLICING Search TRANS+SPLICING
10 BIOINFORMATICS 44724 3% 5% 341 Search BIOINFORMATICS Search BIOINFORMATICS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 1836 CHROMOSOME TERRITORY//CHIP SEQ//NUCLEAR ARCHITECTURE
2 341 MOLECULAR BIOLOGY AND EVOLUTION//EVOLUTIONARY BIOLOGY//GENETICS & HEREDITY
3 4182 COMPUTER APPLICATIONS IN THE BIOSCIENCES//ADAPTIVE WEIGHTED LEAST SQUARES//CARLOS CHAGAS FILHO
4 756 MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS
5 2658 GRAPHICAL REPRESENTATION//SUCCESS RUNS//JOURNAL OF QUANTITATIVE LINGUISTICS
6 2113 CRIZOTINIB//ALK//ANAPLASTIC LYMPHOMA KINASE
7 318 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING
8 2838 LOOP MEDIATED ISOTHERMAL AMPLIFICATION//LAMP//WHOLE GENOME AMPLIFICATION
9 3518 DIFFERENTIAL DISPLAY//MRNA DIFFERENTIAL DISPLAY//ANIM NUTR FEED YUNNAN PROV
10 2961 DATA GRID//GRID COMPUTING//SCIENCE GATEWAY

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