Class information for:
Level 1: MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
747 2             BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS 12946
1990 1                   MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES 2436

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 MULTIPLE SEQUENCE ALIGNMENT authKW 675727 6% 38% 136
2 SEQUENCE ALIGNMENT authKW 429829 6% 23% 147
3 COMPUTER APPLICATIONS IN THE BIOSCIENCES journal 364054 7% 18% 160
4 SPACED SEEDS authKW 186922 1% 85% 17
5 LOCAL ALIGNMENT authKW 156507 1% 55% 22
6 SMITH WATERMAN authKW 143975 1% 70% 16
7 STATISTICAL ALIGNMENT authKW 142297 0% 100% 11
8 T COFFEE authKW 117599 0% 91% 10
9 BIOINFORMATICS journal 100857 12% 3% 296
10 MULTIPLE ALIGNMENT authKW 88148 1% 24% 28

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 68538 31% 1% 755
2 Biochemical Research Methods 20524 31% 0% 749
3 Biotechnology & Applied Microbiology 11158 29% 0% 712
4 Computer Science, Interdisciplinary Applications 8311 16% 0% 395
5 Computer Science, Theory & Methods 3373 11% 0% 262
6 Statistics & Probability 2847 9% 0% 214
7 Biochemistry & Molecular Biology 2052 27% 0% 656
8 Evolutionary Biology 1614 6% 0% 140
9 Genetics & Heredity 651 8% 0% 198
10 Computer Science, Artificial Intelligence 600 5% 0% 115

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 INTERDISCIPLINARY STUDIES STRUCT FORMAT 46198 0% 71% 5
2 DEP LENGUAJES CIENCIAS COMPUTAC 29105 0% 75% 3
3 BIOL FR 36 25872 0% 100% 2
4 PHYSIOL CELLULAIRE VEGETALE CEA GRENOBLE 25872 0% 100% 2
5 SYMBIOSE TEAM PROJECT 25872 0% 100% 2
6 COMPARAT BIOINFORMAT GRP 25868 0% 50% 4
7 EDUC TECHNOL COMP 17247 0% 67% 2
8 GR H C TURE MASSIVELY PARALLEL COMP 17247 0% 67% 2
9 INFORMAT INTERDISZIPLINA 17247 0% 67% 2
10 BIOTECHNOL INFORMAT 16780 2% 2% 54

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 COMPUTER APPLICATIONS IN THE BIOSCIENCES 364054 7% 18% 160
2 BIOINFORMATICS 100857 12% 3% 296
3 JOURNAL OF COMPUTATIONAL BIOLOGY 84733 4% 6% 103
4 BMC BIOINFORMATICS 38464 6% 2% 153
5 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 12171 1% 3% 34
6 NUCLEIC ACIDS RESEARCH 11922 8% 0% 195
7 GENE-COMBIS 9698 0% 25% 3
8 ALGORITHMS FOR MOLECULAR BIOLOGY 8286 1% 5% 14
9 BULLETIN OF MATHEMATICAL BIOLOGY 5858 1% 1% 34
10 EVOLUTIONARY BIOINFORMATICS 4623 0% 3% 11

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 MULTIPLE SEQUENCE ALIGNMENT 675727 6% 38% 136 Search MULTIPLE+SEQUENCE+ALIGNMENT Search MULTIPLE+SEQUENCE+ALIGNMENT
2 SEQUENCE ALIGNMENT 429829 6% 23% 147 Search SEQUENCE+ALIGNMENT Search SEQUENCE+ALIGNMENT
3 SPACED SEEDS 186922 1% 85% 17 Search SPACED+SEEDS Search SPACED+SEEDS
4 LOCAL ALIGNMENT 156507 1% 55% 22 Search LOCAL+ALIGNMENT Search LOCAL+ALIGNMENT
5 SMITH WATERMAN 143975 1% 70% 16 Search SMITH+WATERMAN Search SMITH+WATERMAN
6 STATISTICAL ALIGNMENT 142297 0% 100% 11 Search STATISTICAL+ALIGNMENT Search STATISTICAL+ALIGNMENT
7 T COFFEE 117599 0% 91% 10 Search T+COFFEE Search T+COFFEE
8 MULTIPLE ALIGNMENT 88148 1% 24% 28 Search MULTIPLE+ALIGNMENT Search MULTIPLE+ALIGNMENT
9 HOMOLOGY SEARCH 88095 1% 25% 27 Search HOMOLOGY+SEARCH Search HOMOLOGY+SEARCH
10 SMITH WATERMAN ALGORITHM 80980 0% 52% 12 Search SMITH+WATERMAN+ALGORITHM Search SMITH+WATERMAN+ALGORITHM

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 14767 EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE
2 12337 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
3 6983 PROTEIN STRUCTURE ALIGNMENT//PROTEIN STRUCTURE COMPARISON//PROTEIN FOLD
4 34166 CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC
5 600 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP
6 24191 COMPUTER APPLICATIONS IN THE BIOSCIENCES//ADAPTIVE WEIGHTED LEAST SQUARES//CARLOS CHAGAS FILHO
7 20321 CONSERVED NON CODING ELEMENTS//ENERGY ENVIRONM BIOL COMP//SARS MARINE MOL BIOL
8 19158 COMPUTER APPLICATIONS IN THE BIOSCIENCES//AG MOLEK BIOINFORMAT//PAIR PREFERENCES
9 32458 DNA SEQUENCE COMPRESSION//REFERENCE BASED COMPRESSION//REFERENTIAL COMPRESSION
10 19572 ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY

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