Class information for:
Level 1: ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
341 2             MOLECULAR BIOLOGY AND EVOLUTION//EVOLUTIONARY BIOLOGY//GENETICS & HEREDITY 18153
19572 1                   ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY 523

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 ORTHOLOGY authKW 377910 5% 22% 28
2 TREE RECONCILIATION authKW 364566 2% 55% 11
3 GENE TREE PARSIMONY authKW 246058 1% 58% 7
4 INFORMAT DIRO address 160692 1% 67% 4
5 BIDIRECTIONAL BEST HIT authKW 135585 1% 75% 3
6 PARALOGY authKW 128890 2% 16% 13
7 EVOLUTION ALONG A TREE authKW 120521 0% 100% 2
8 GENE FAMILIES EVOLUTION authKW 120521 0% 100% 2
9 GENE TREE AND SPECIES TREE RECONCILIATION authKW 120521 0% 100% 2
10 GERMANY MOL MED PARTNERSHIP UNIT address 120521 0% 100% 2

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 26271 41% 0% 216
2 Biochemical Research Methods 7865 41% 0% 213
3 Biotechnology & Applied Microbiology 5293 43% 0% 223
4 Evolutionary Biology 1764 12% 0% 65
5 Genetics & Heredity 1494 23% 0% 120
6 Biochemistry & Molecular Biology 576 30% 0% 157
7 Computer Science, Interdisciplinary Applications 319 7% 0% 38
8 Statistics & Probability 318 7% 0% 34
9 Computer Science, Theory & Methods 69 4% 0% 20
10 Mathematics, Interdisciplinary Applications 58 3% 0% 15

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 INFORMAT DIRO 160692 1% 67% 4
2 GERMANY MOL MED PARTNERSHIP UNIT 120521 0% 100% 2
3 ISE MIRD 120521 0% 100% 2
4 BERKELEY PHYLOGENOM GRP 80346 0% 67% 2
5 ANDALUZ BIOL DESARROLLO CABDCSICJA 60260 0% 100% 1
6 ASSAYS BIOINFORMAT 60260 0% 100% 1
7 BGBP UMR 5558 60260 0% 100% 1
8 BINFORMAT 60260 0% 100% 1
9 BIOL STRUCT GENOM INSERM 60260 0% 100% 1
10 CIVRS 60260 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC BIOINFORMATICS 33471 13% 1% 66
2 ALGORITHMS FOR MOLECULAR BIOLOGY 23885 2% 4% 11
3 BIOINFORMATICS 19946 12% 1% 61
4 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 11066 3% 1% 15
5 JOURNAL OF COMPUTATIONAL BIOLOGY 10743 3% 1% 17
6 NUCLEIC ACIDS RESEARCH 6635 13% 0% 67
7 BRIEFINGS IN BIOINFORMATICS 6439 2% 1% 9
8 SYSTEMATIC BIOLOGY 6201 2% 1% 12
9 EVOLUTIONARY BIOINFORMATICS 4461 1% 1% 5
10 GENOME BIOLOGY AND EVOLUTION 3937 2% 1% 10

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 ORTHOLOGY 377910 5% 22% 28 Search ORTHOLOGY Search ORTHOLOGY
2 TREE RECONCILIATION 364566 2% 55% 11 Search TREE+RECONCILIATION Search TREE+RECONCILIATION
3 GENE TREE PARSIMONY 246058 1% 58% 7 Search GENE+TREE+PARSIMONY Search GENE+TREE+PARSIMONY
4 BIDIRECTIONAL BEST HIT 135585 1% 75% 3 Search BIDIRECTIONAL+BEST+HIT Search BIDIRECTIONAL+BEST+HIT
5 PARALOGY 128890 2% 16% 13 Search PARALOGY Search PARALOGY
6 EVOLUTION ALONG A TREE 120521 0% 100% 2 Search EVOLUTION+ALONG+A+TREE Search EVOLUTION+ALONG+A+TREE
7 GENE FAMILIES EVOLUTION 120521 0% 100% 2 Search GENE+FAMILIES+EVOLUTION Search GENE+FAMILIES+EVOLUTION
8 GENE TREE AND SPECIES TREE RECONCILIATION 120521 0% 100% 2 Search GENE+TREE+AND+SPECIES+TREE+RECONCILIATION Search GENE+TREE+AND+SPECIES+TREE+RECONCILIATION
9 HOST PARASITE COPHYLOGENY 120521 0% 100% 2 Search HOST+PARASITE+COPHYLOGENY Search HOST+PARASITE+COPHYLOGENY
10 INPARALOG 120521 0% 100% 2 Search INPARALOG Search INPARALOG

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 37004 OPERON PREDICTION//CONSERVED GENE PAIR//OPERON
2 13775 SPECIES TREE//GENE TREE//MULTISPECIES COALESCENT
3 8481 WHOLE GENOME DUPLICATION//GENE DUPLICATION//GENOME DUPLICATION
4 6019 LATERAL GENE TRANSFER//HORIZONTAL GENE TRANSFER//TREE OF LIFE
5 22669 CLOSED LOOPS//EVOLUTIONARY BIOINFORMAT//GENOME ERS
6 14964 GENOME REARRANGEMENT//GENOME REARRANGEMENTS//SORTING BY REVERSALS
7 7823 PHYLOGENETIC NETWORK//TIGHT SPAN//SUPERTREE
8 15472 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA
9 34166 CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC
10 14767 EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE

Go to start page