Class information for:
Level 1: OPERON PREDICTION//CONSERVED GENE PAIR//OPERON

Basic class information

Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.



Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
341 2             MOLECULAR BIOLOGY AND EVOLUTION//EVOLUTIONARY BIOLOGY//GENETICS & HEREDITY 18153
37004 1                   OPERON PREDICTION//CONSERVED GENE PAIR//OPERON 89

Terms with highest relevance score



rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 OPERON PREDICTION authKW 1106636 6% 63% 5
2 CONSERVED GENE PAIR authKW 708249 2% 100% 2
3 OPERON authKW 396594 16% 8% 14
4 BIOINFORMAT PATTERN RECOGNIT address 354125 1% 100% 1
5 CLASSES OF CELL FUNCTION authKW 354125 1% 100% 1
6 COG FUNCTION authKW 354125 1% 100% 1
7 CONDITION DEPENDENT OPERON MAPS authKW 354125 1% 100% 1
8 CONSERVATION OF GENE ORDER authKW 354125 1% 100% 1
9 DIRECTON authKW 354125 1% 100% 1
10 DOMAIN OF UNKNOWN FUNCTION 2319 authKW 354125 1% 100% 1

Web of Science journal categories



chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 1733 26% 0% 23
2 Biochemical Research Methods 390 22% 0% 20
3 Biotechnology & Applied Microbiology 314 26% 0% 23
4 Biochemistry & Molecular Biology 283 47% 0% 42
5 Genetics & Heredity 111 16% 0% 14
6 Biophysics 58 10% 0% 9
7 Evolutionary Biology 56 6% 0% 5
8 Statistics & Probability 12 3% 0% 3
9 Computer Science, Artificial Intelligence 10 3% 0% 3
10 Computer Science, Interdisciplinary Applications 9 3% 0% 3

Address terms



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMAT PATTERN RECOGNIT 354125 1% 100% 1
2 DPTO ECOL EVOLUC 354125 1% 100% 1
3 HUMAN GENOMERIKENGENOM SCI 354125 1% 100% 1
4 MED SCI GENOME DATABASE 354125 1% 100% 1
5 SYMBOL COMPUTAT KNOWLEDGE EDUC 354125 1% 100% 1
6 THEORET BIOL PROT SCI 354125 1% 100% 1
7 NEURONE 283297 2% 40% 2
8 CIFN 245159 3% 23% 3
9 PROGRAM COMPUTAT GENOM 202350 4% 14% 4
10 BIOINFORMAT MOE BIOINFORMAT 177061 1% 50% 1

Journals



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 NUCLEIC ACIDS RESEARCH 5056 27% 0% 24
2 BRIEFINGS IN BIOINFORMATICS 4210 3% 0% 3
3 BRIEFINGS IN FUNCTIONAL GENOMICS 4187 2% 1% 2
4 BIOINFORMATICS 2549 10% 0% 9
5 EVOLUTIONARY BIOINFORMATICS 1049 1% 0% 1
6 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 862 4% 0% 4
7 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 765 1% 0% 1
8 CURRENT BIOINFORMATICS 733 1% 0% 1
9 BMC BIOINFORMATICS 717 4% 0% 4
10 CURRENT GENOMICS 501 1% 0% 1

Author Key Words



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 OPERON PREDICTION 1106636 6% 63% 5 Search OPERON+PREDICTION Search OPERON+PREDICTION
2 CONSERVED GENE PAIR 708249 2% 100% 2 Search CONSERVED+GENE+PAIR Search CONSERVED+GENE+PAIR
3 OPERON 396594 16% 8% 14 Search OPERON Search OPERON
4 CLASSES OF CELL FUNCTION 354125 1% 100% 1 Search CLASSES+OF+CELL+FUNCTION Search CLASSES+OF+CELL+FUNCTION
5 COG FUNCTION 354125 1% 100% 1 Search COG+FUNCTION Search COG+FUNCTION
6 CONDITION DEPENDENT OPERON MAPS 354125 1% 100% 1 Search CONDITION+DEPENDENT+OPERON+MAPS Search CONDITION+DEPENDENT+OPERON+MAPS
7 CONSERVATION OF GENE ORDER 354125 1% 100% 1 Search CONSERVATION+OF+GENE+ORDER Search CONSERVATION+OF+GENE+ORDER
8 DIRECTON 354125 1% 100% 1 Search DIRECTON Search DIRECTON
9 DOMAIN OF UNKNOWN FUNCTION 2319 354125 1% 100% 1 Search DOMAIN+OF+UNKNOWN+FUNCTION+2319 Search DOMAIN+OF+UNKNOWN+FUNCTION+2319
10 EVALUATION OF PREDICTION 354125 1% 100% 1 Search EVALUATION+OF+PREDICTION Search EVALUATION+OF+PREDICTION

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1



rank cluster_id2 link
1 19572 ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY
2 14964 GENOME REARRANGEMENT//GENOME REARRANGEMENTS//SORTING BY REVERSALS
3 6019 LATERAL GENE TRANSFER//HORIZONTAL GENE TRANSFER//TREE OF LIFE
4 2027 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
5 6821 HFQ//SRNA//RNA BIOL GRP
6 26129 BIDIRECTIONAL PROMOTER//NEIGHBORING GENES//452 BP PROMOTER
7 19519 ESSENTIAL GENES//TN SEQ//MINIMAL GENOME
8 594 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
9 23442 CHARGAFFS SECOND PARITY RULE//SKEWS//STRAND ASYMMETRY
10 12337 GENE PREDICTION//GENE FINDING//GENE RECOGNITION

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