Class information for:
Level 1: PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
133 3       BIOCHEMICAL RESEARCH METHODS//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//PROTEOMICS 67621
756 2             MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS 12852
594 1                   PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS 3289

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEIN INTERACTION NETWORK authKW 467320 3% 44% 110
2 PROTEIN PROTEIN INTERACTION NETWORK authKW 322836 4% 29% 118
3 ESSENTIAL PROTEINS authKW 291451 1% 82% 37
4 NETWORK ALIGNMENT authKW 220908 1% 82% 28
5 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 159291 41% 1% 1334
6 BIOINFORMATICS journal 145452 13% 4% 413
7 PROTEIN PROTEIN INTERACTION authKW 140906 10% 5% 315
8 PROTEIN COMPLEX authKW 138145 3% 13% 114
9 PPI NETWORK authKW 115624 1% 46% 26
10 BMC BIOINFORMATICS journal 112013 9% 4% 303

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 159291 41% 1% 1334
2 Biochemical Research Methods 51879 42% 0% 1371
3 Biotechnology & Applied Microbiology 24419 37% 0% 1209
4 Biochemistry & Molecular Biology 3506 30% 0% 974
5 Genetics & Heredity 1767 11% 0% 357
6 Computer Science, Interdisciplinary Applications 1229 6% 0% 192
7 Statistics & Probability 811 4% 0% 143
8 Biology 351 4% 0% 119
9 Mathematics, Interdisciplinary Applications 193 2% 0% 73
10 Multidisciplinary Sciences 183 2% 0% 51

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 CCSB 38831 1% 21% 19
2 BIOINFORMAT MIPS 31289 0% 47% 7
3 NW COMPLEX 23947 0% 50% 5
4 BIOINFORMAT 22479 6% 1% 187
5 LEWIS SIGLER INTEGRAT GENOM 22369 1% 5% 45
6 CANC SYST BIOL 21723 1% 8% 29
7 AG NEUROPROTE 21555 0% 75% 3
8 INTELLIGENT DATA 20401 0% 30% 7
9 BIOINFORMAT COMPUTAT LIFE SCI 20281 0% 35% 6
10 COMP SCI 19782 18% 0% 582

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 145452 13% 4% 413
2 BMC BIOINFORMATICS 112013 9% 4% 303
3 BMC SYSTEMS BIOLOGY 100198 4% 8% 132
4 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 35068 2% 5% 67
5 JOURNAL OF COMPUTATIONAL BIOLOGY 23410 2% 4% 63
6 CURRENT BIOINFORMATICS 17833 1% 6% 30
7 PLOS COMPUTATIONAL BIOLOGY 17121 3% 2% 95
8 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 13969 1% 6% 26
9 NUCLEIC ACIDS RESEARCH 10758 7% 1% 216
10 GENOME BIOLOGY 9614 2% 2% 56

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PROTEIN INTERACTION NETWORK 467320 3% 44% 110 Search PROTEIN+INTERACTION+NETWORK Search PROTEIN+INTERACTION+NETWORK
2 PROTEIN PROTEIN INTERACTION NETWORK 322836 4% 29% 118 Search PROTEIN+PROTEIN+INTERACTION+NETWORK Search PROTEIN+PROTEIN+INTERACTION+NETWORK
3 ESSENTIAL PROTEINS 291451 1% 82% 37 Search ESSENTIAL+PROTEINS Search ESSENTIAL+PROTEINS
4 NETWORK ALIGNMENT 220908 1% 82% 28 Search NETWORK+ALIGNMENT Search NETWORK+ALIGNMENT
5 PROTEIN PROTEIN INTERACTION 140906 10% 5% 315 Search PROTEIN+PROTEIN+INTERACTION Search PROTEIN+PROTEIN+INTERACTION
6 PROTEIN COMPLEX 138145 3% 13% 114 Search PROTEIN+COMPLEX Search PROTEIN+COMPLEX
7 PPI NETWORK 115624 1% 46% 26 Search PPI+NETWORK Search PPI+NETWORK
8 INTERACTOME 103057 2% 17% 62 Search INTERACTOME Search INTERACTOME
9 PROTEIN FUNCTION PREDICTION 96688 1% 27% 38 Search PROTEIN+FUNCTION+PREDICTION Search PROTEIN+FUNCTION+PREDICTION
10 PROTEIN PROTEIN INTERACTION PPI NETWORK 89807 0% 63% 15 Search PROTEIN+PROTEIN+INTERACTION+PPI+NETWORK Search PROTEIN+PROTEIN+INTERACTION+PPI+NETWORK

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 17901 DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK//GENE PRIORITIZATION
2 24356 GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN
3 28608 AFFINITY PURIFICATION COUPLED TO MASS SPECTROMETRY//TANDEM AFFINITY PURIFICATION//SAINTEXPRESS
4 26588 GENE COMPACTNESS//SELECTIVE CONSTRAINT//EVOLUTIONARY RATE
5 18140 NETWORK MOTIFS//TRIANGLE COUNTING//TRIANGLE LISTING
6 37822 INTEGRAT GENOM AGEING GRP//1 NEAREST NEIGHBOUR//AGING DATABASE
7 9272 GENE SET ANALYSIS//BMC BIOINFORMATICS//BIOINFORMATICS
8 37004 OPERON PREDICTION//CONSERVED GENE PAIR//OPERON
9 15781 WEIGHTED GENE CO EXPRESSION NETWORK ANALYSIS//GENE CO EXPRESSION NETWORK//CO EXPRESSION NETWORK ANALYSIS
10 13800 GENETIC INTERACTION//BANTING BEST MED//SYNTHETIC DOSAGE LETHALITY

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