Class information for:
Level 1: GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
133 3       BIOCHEMICAL RESEARCH METHODS//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//PROTEOMICS 67621
756 2             MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS 12852
24356 1                   GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN 338

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GENE ONTOLOGY authKW 358787 17% 7% 58
2 SEMANTIC SIMILARITY authKW 328560 10% 11% 33
3 CXC DOMAIN authKW 298380 1% 80% 4
4 WEAK LINKAGE authKW 291385 1% 63% 5
5 RELATED TERMS authKW 279733 1% 100% 3
6 SEMANTIC SIMILARITY MEASURE authKW 240463 2% 37% 7
7 GO ANNOTATIONS authKW 209798 1% 75% 3
8 BIOLOGICAL SEARCH ENGINE authKW 186489 1% 100% 2
9 BIOMOLECULAR ANNOTATIONS authKW 186489 1% 100% 2
10 GENE FUNCTIONAL SIMILARITY authKW 186489 1% 100% 2

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 22917 48% 0% 162
2 Biochemical Research Methods 6313 45% 0% 153
3 Biotechnology & Applied Microbiology 2939 40% 0% 134
4 Computer Science, Interdisciplinary Applications 344 9% 0% 31
5 Computer Science, Information Systems 174 7% 0% 22
6 Genetics & Heredity 131 9% 0% 32
7 Statistics & Probability 116 5% 0% 17
8 Computer Science, Theory & Methods 111 6% 0% 19
9 Medical Informatics 108 2% 0% 8
10 Mathematics, Interdisciplinary Applications 104 4% 0% 15

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GOA PROJECT 186489 1% 100% 2
2 EXEL 167837 1% 60% 3
3 COMP BIOL PL ALGORITHM 93244 0% 100% 1
4 FFCI RP USP 93244 0% 100% 1
5 GENETWISTER TECHNOL 93244 0% 100% 1
6 GENOME 192B 93244 0% 100% 1
7 HEILONGJIANG PROV INCUBATOR STATE 93244 0% 100% 1
8 IBMBG 93244 0% 100% 1
9 IDM HLTH SCI 93244 0% 100% 1
10 INFECT DIS MOL MEDCOMPUTAT BIOL GRP 93244 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC BIOINFORMATICS 35997 16% 1% 55
2 BIOINFORMATICS 16068 13% 0% 44
3 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 14928 4% 1% 14
4 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 7254 2% 1% 6
5 JOURNAL OF BIOMEDICAL SEMANTICS 5559 1% 1% 4
6 JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 3731 1% 1% 4
7 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 3287 1% 1% 5
8 BIODATA MINING 1625 1% 1% 2
9 LECTURE NOTES IN BIOINFORMATICS 1193 0% 1% 1
10 PLOS COMPUTATIONAL BIOLOGY 1179 2% 0% 8

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 GENE ONTOLOGY 358787 17% 7% 58 Search GENE+ONTOLOGY Search GENE+ONTOLOGY
2 SEMANTIC SIMILARITY 328560 10% 11% 33 Search SEMANTIC+SIMILARITY Search SEMANTIC+SIMILARITY
3 CXC DOMAIN 298380 1% 80% 4 Search CXC+DOMAIN Search CXC+DOMAIN
4 WEAK LINKAGE 291385 1% 63% 5 Search WEAK+LINKAGE Search WEAK+LINKAGE
5 RELATED TERMS 279733 1% 100% 3 Search RELATED+TERMS Search RELATED+TERMS
6 SEMANTIC SIMILARITY MEASURE 240463 2% 37% 7 Search SEMANTIC+SIMILARITY+MEASURE Search SEMANTIC+SIMILARITY+MEASURE
7 GO ANNOTATIONS 209798 1% 75% 3 Search GO+ANNOTATIONS Search GO+ANNOTATIONS
8 BIOLOGICAL SEARCH ENGINE 186489 1% 100% 2 Search BIOLOGICAL+SEARCH+ENGINE Search BIOLOGICAL+SEARCH+ENGINE
9 BIOMOLECULAR ANNOTATIONS 186489 1% 100% 2 Search BIOMOLECULAR+ANNOTATIONS Search BIOMOLECULAR+ANNOTATIONS
10 GENE FUNCTIONAL SIMILARITY 186489 1% 100% 2 Search GENE+FUNCTIONAL+SIMILARITY Search GENE+FUNCTIONAL+SIMILARITY

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 9272 GENE SET ANALYSIS//BMC BIOINFORMATICS//BIOINFORMATICS
2 17901 DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK//GENE PRIORITIZATION
3 594 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
4 4203 JOURNAL OF BIOMEDICAL SEMANTICS//DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION//ZFIN
5 14767 EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE
6 8659 SEMANTIC SIMILARITY//WORD SENSE DISAMBIGUATION//WORDNET
7 8231 PROTEIN FUNCTION PREDICTION//3D ZERNIKE DESCRIPTOR//COMPLEX SCI SOFTWARE
8 22669 CLOSED LOOPS//EVOLUTIONARY BIOINFORMAT//GENOME ERS
9 1998 NATURAL LANGUAGE PROCESSING//TEXT MINING//TEXT MIN
10 19572 ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY

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