Class information for:
Level 1: JOURNAL OF BIOMEDICAL SEMANTICS//DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION//ZFIN

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
133 3       BIOCHEMICAL RESEARCH METHODS//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//PROTEOMICS 67621
756 2             MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS 12852
4203 1                   JOURNAL OF BIOMEDICAL SEMANTICS//DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION//ZFIN 1862

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 JOURNAL OF BIOMEDICAL SEMANTICS journal 806249 6% 42% 113
2 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION journal 248882 5% 14% 102
3 ZFIN address 206311 1% 76% 16
4 BIO ONTOLOGY authKW 158896 1% 72% 13
5 DATABASE LIFE SCI address 151668 1% 41% 22
6 ZEBRAFISH INFORMAT NETWORK address 137087 0% 90% 9
7 ONTOLOGY authKW 127886 10% 4% 189
8 BIOMEDICAL ONTOLOGIES authKW 114218 1% 38% 18
9 DATA INTEGRATION authKW 105552 4% 8% 83
10 WORMBASE address 90259 0% 67% 8

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 80073 38% 1% 712
2 Biochemical Research Methods 10227 25% 0% 466
3 Biotechnology & Applied Microbiology 7616 28% 0% 516
4 Medical Informatics 3522 6% 0% 103
5 Biochemistry & Molecular Biology 1726 28% 0% 521
6 Genetics & Heredity 1094 11% 0% 210
7 Computer Science, Interdisciplinary Applications 953 7% 0% 125
8 Computer Science, Information Systems 838 6% 0% 114
9 Computer Science, Artificial Intelligence 276 4% 0% 71
10 Computer Science, Theory & Methods 160 3% 0% 60

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 ZFIN 206311 1% 76% 16
2 DATABASE LIFE SCI 151668 1% 41% 22
3 ZEBRAFISH INFORMAT NETWORK 137087 0% 90% 9
4 WORMBASE 90259 0% 67% 8
5 RGD 87039 0% 86% 6
6 STANFORD BIOMED INFORMAT 85476 1% 21% 24
7 POMBASE 84623 0% 100% 5
8 IFOMIS 80632 0% 53% 9
9 FLYBASE 80583 1% 48% 10
10 MOUSE INFORMAT GRP 80583 1% 48% 10

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 JOURNAL OF BIOMEDICAL SEMANTICS 806249 6% 42% 113
2 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 248882 5% 14% 102
3 LECTURE NOTES IN BIOINFORMATICS 78302 1% 24% 19
4 BMC BIOINFORMATICS 61547 9% 2% 169
5 NUCLEIC ACIDS RESEARCH 54168 19% 1% 360
6 BRIEFINGS IN BIOINFORMATICS 53660 3% 6% 49
7 BIOINFORMATICS 49813 10% 2% 182
8 JOURNAL OF BIOMEDICAL INFORMATICS 32996 3% 4% 54
9 APPLIED ONTOLOGY 19300 1% 10% 11
10 NEUROINFORMATICS 17987 1% 6% 19

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 BIO ONTOLOGY 158896 1% 72% 13 Search BIO+ONTOLOGY Search BIO+ONTOLOGY
2 ONTOLOGY 127886 10% 4% 189 Search ONTOLOGY Search ONTOLOGY
3 BIOMEDICAL ONTOLOGIES 114218 1% 38% 18 Search BIOMEDICAL+ONTOLOGIES Search BIOMEDICAL+ONTOLOGIES
4 DATA INTEGRATION 105552 4% 8% 83 Search DATA+INTEGRATION Search DATA+INTEGRATION
5 SEMANTIC WEB 79721 5% 6% 84 Search SEMANTIC+WEB Search SEMANTIC+WEB
6 BIOMEDICAL ONTOLOGY 73574 1% 43% 10 Search BIOMEDICAL+ONTOLOGY Search BIOMEDICAL+ONTOLOGY
7 OBO 67694 0% 67% 6 Search OBO Search OBO
8 BIOLOGICAL DATA INTEGRATION 54157 0% 80% 4 Search BIOLOGICAL+DATA+INTEGRATION Search BIOLOGICAL+DATA+INTEGRATION
9 REFERENT TRACKING 47008 0% 56% 5 Search REFERENT+TRACKING Search REFERENT+TRACKING
10 FOUNDATIONAL MODEL OF ANATOMY 45130 0% 67% 4 Search FOUNDATIONAL+MODEL+OF+ANATOMY Search FOUNDATIONAL+MODEL+OF+ANATOMY

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 24356 GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN
2 14767 EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE
3 17901 DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK//GENE PRIORITIZATION
4 34166 CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC
5 1998 NATURAL LANGUAGE PROCESSING//TEXT MINING//TEXT MIN
6 11930 SCIENTIFIC WORKFLOWS//SCIENCE GATEWAY//SCIENTIFIC WORKFLOW
7 32352 ARMAMENTARIUM//MOUSE TUMOR BIOLOGY DATABASE//PROTEZ UOMO ECOSISTEMI
8 29036 LIMS//ELECTRONIC LABORATORY NOTEBOOK//LABORATORY INFORMATION MANAGEMENT SYSTEM
9 17929 MOUSE IMAGING//MAGNETIC RESONANCE MICROSCOPY//VOXELATION
10 19572 ORTHOLOGY//TREE RECONCILIATION//GENE TREE PARSIMONY

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