Class information for:
Level 2: MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
133 3       BIOCHEMICAL RESEARCH METHODS//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//PROTEOMICS 67621
756 2             MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS 12852
594 1                   PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS 3289
1998 1                   NATURAL LANGUAGE PROCESSING//TEXT MINING//TEXT MIN 2434
4203 1                   JOURNAL OF BIOMEDICAL SEMANTICS//DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION//ZFIN 1862
8037 1                   DRUG REPOSITIONING//NETWORK PHARMACOLOGY//SYSTEMS PHARMACOLOGY 1324
9272 1                   GENE SET ANALYSIS//BMC BIOINFORMATICS//BIOINFORMATICS 1202
10582 1                   NSSNPS//POLYPHEN//LSDB 1081
15781 1                   WEIGHTED GENE CO EXPRESSION NETWORK ANALYSIS//GENE CO EXPRESSION NETWORK//CO EXPRESSION NETWORK ANALYSIS 719
17901 1                   DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK//GENE PRIORITIZATION 603
24356 1                   GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN 338

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 496036 36% 4% 4658
2 BMC BIOINFORMATICS journal 474783 10% 16% 1233
3 BIOINFORMATICS journal 413991 11% 12% 1378
4 JOURNAL OF BIOMEDICAL SEMANTICS journal 286321 1% 66% 177
5 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION journal 228586 2% 36% 257
6 JOURNAL OF BIOMEDICAL INFORMATICS journal 144488 2% 20% 297
7 PROTEIN INTERACTION NETWORK authKW 142153 1% 48% 120
8 NATURAL LANGUAGE PROCESSING authKW 138537 2% 20% 282
9 TEXT MINING authKW 135449 2% 20% 283
10 PROTEIN PROTEIN INTERACTION NETWORK authKW 128017 1% 36% 147

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 496036 36% 4% 4658
2 Biochemical Research Methods 117102 32% 1% 4104
3 Biotechnology & Applied Microbiology 68990 32% 1% 4049
4 Medical Informatics 39877 7% 2% 905
5 Computer Science, Interdisciplinary Applications 13728 9% 1% 1206
6 Genetics & Heredity 9191 12% 0% 1578
7 Biochemistry & Molecular Biology 6863 23% 0% 2899
8 Computer Science, Information Systems 5968 6% 0% 798
9 Information Science & Library Science 4051 3% 1% 386
10 Health Care Sciences & Services 2179 3% 0% 416

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 TEXT MIN 95099 0% 76% 51
2 BIOINFORMAT 79164 5% 5% 694
3 BIOMED INFORMAT 68959 4% 6% 472
4 BIOTECHNOL INFORMAT 47991 2% 9% 210
5 COMPUTAT PHARMACOL 43216 0% 59% 30
6 COMP SCI 40419 13% 1% 1662
7 ZFIN 33715 0% 81% 17
8 BIOINFORMAT SCI TECHNOL 33497 1% 16% 84
9 DATABASE LIFE SCI 33052 0% 50% 27
10 LIB MED 25516 1% 9% 114

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC BIOINFORMATICS 474783 10% 16% 1233
2 BIOINFORMATICS 413991 11% 12% 1378
3 JOURNAL OF BIOMEDICAL SEMANTICS 286321 1% 66% 177
4 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 228586 2% 36% 257
5 JOURNAL OF BIOMEDICAL INFORMATICS 144488 2% 20% 297
6 BMC SYSTEMS BIOLOGY 85929 2% 15% 242
7 BRIEFINGS IN BIOINFORMATICS 63299 1% 19% 140
8 JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 62828 2% 9% 296
9 NUCLEIC ACIDS RESEARCH 60465 8% 3% 1009
10 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 36846 1% 11% 136

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PROTEIN INTERACTION NETWORK 142153 1% 48% 120 Search PROTEIN+INTERACTION+NETWORK Search PROTEIN+INTERACTION+NETWORK
2 NATURAL LANGUAGE PROCESSING 138537 2% 20% 282 Search NATURAL+LANGUAGE+PROCESSING Search NATURAL+LANGUAGE+PROCESSING
3 TEXT MINING 135449 2% 20% 283 Search TEXT+MINING Search TEXT+MINING
4 PROTEIN PROTEIN INTERACTION NETWORK 128017 1% 36% 147 Search PROTEIN+PROTEIN+INTERACTION+NETWORK Search PROTEIN+PROTEIN+INTERACTION+NETWORK
5 GENE ONTOLOGY 110717 2% 23% 199 Search GENE+ONTOLOGY Search GENE+ONTOLOGY
6 INFORMATION EXTRACTION 80526 1% 23% 145 Search INFORMATION+EXTRACTION Search INFORMATION+EXTRACTION
7 ESSENTIAL PROTEINS 74531 0% 82% 37 Search ESSENTIAL+PROTEINS Search ESSENTIAL+PROTEINS
8 DATA INTEGRATION 65431 1% 16% 172 Search DATA+INTEGRATION Search DATA+INTEGRATION
9 BIOMEDICAL TEXT MINING 57231 0% 81% 29 Search BIOMEDICAL+TEXT+MINING Search BIOMEDICAL+TEXT+MINING
10 DRUG REPOSITIONING 56816 1% 34% 69 Search DRUG+REPOSITIONING Search DRUG+REPOSITIONING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 2138 FLUX BALANCE ANALYSIS//METABOLIC NETWORK//PHOSPHOTRANSFERASE SYSTEM
2 1246 FALSE DISCOVERY RATE//GENE SELECTION//TOXICOGENOMICS
3 3687 CEREBLON//PROTEIN KNOCKDOWN//BIMOLECULAR FLUORESCENCE COMPLEMENTATION
4 3939 PHARMACEUT CHEM BIOANALYT//TIP49//REPTIN
5 747 BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS
6 4152 PROGRAM TRANSLAT IMMUNOVIROL BIODEF//MAYO VACCINE GRP//VACCINE GRP
7 954 BOOLEAN NETWORKS//GENE REGULATORY NETWORK//GENETIC REGULATORY NETWORKS
8 318 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING
9 2113 CRIZOTINIB//ALK//ANAPLASTIC LYMPHOMA KINASE
10 2508 PHOSPHOPROTEOMICS//PHOSPHOPEPTIDES//INTRINSICALLY DISORDERED PROTEINS

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