Class information for:
Level 2: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
600 1                   PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP 3285
1311 1                   JOURNAL OF CHEMICAL INFORMATION AND MODELING//VIRTUAL SCREENING//JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN 2739
2565 1                   PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST 2239
5300 1                   ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL 1674
6486 1                   CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING 1507
6983 1                   PROTEIN STRUCTURE ALIGNMENT//PROTEIN STRUCTURE COMPARISON//PROTEIN FOLD 1446
8231 1                   PROTEIN FUNCTION PREDICTION//3D ZERNIKE DESCRIPTOR//COMPLEX SCI SOFTWARE 1303
13540 1                   COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION 860
16243 1                   BAKER CHEM CHEM BIOL//UNRES FORCE FIELD//CONFORMATIONAL SPACE ANNEALING 692
18783 1                   INVERSE ISING PROBLEM//CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS 560
19158 1                   COMPUTER APPLICATIONS IN THE BIOSCIENCES//AG MOLEK BIOINFORMAT//PAIR PREFERENCES 541
21152 1                   RCSB PROT DATA BANK//PROT DATA BANK EUROPE PDBE//INTEGRAT PROTE 454
25629 1                   DRUG DESIGN BIOTECHNOL//BIDENTATION//COMPRESSED ANGLE 299
27069 1                   BIOINFORMAT TELEMED//STEPWISE FOLDING//ALPHA ALPHA HAIRPIN 258
27076 1                   CHINESE PEDIAT//PHARMACOINFORMAT NANOTECHNOL//MED GENET PEDIAT MED 258
31062 1                   MOLECULAR VISUALIZATION//BIOMED HLTH INFORMAT PROGRAM//SPATIAL DISTANCE HISTOGRAM 173
33482 1                   LINEAR BINDING MOTIFS//ROSETTA FLEXPEPDOCK//COMPUTATIONAL PEPTIDOLOGY 138
37681 1                   NACL PESQUISA AGROPECUARIA//NUCLEO BIOINFORMAT ESTRUTURAL//AMINO ACID COLOURING 78
38024 1                   C ALPHA TRACE PROBLEM//FEDERAT DENIS POISSONUMR 6083//MATH PHYS THEORFEDERAT DENIS POISSON 71

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS journal 747736 9% 26% 1698
2 PROTEIN STRUCTURE PREDICTION authKW 653429 3% 66% 582
3 JOURNAL OF CHEMICAL INFORMATION AND MODELING journal 220299 4% 20% 651
4 PSEUDO AMINO ACID COMPOSITION authKW 195710 1% 94% 123
5 SCORING FUNCTION authKW 194884 1% 60% 191
6 FOLD RECOGNITION authKW 173156 1% 67% 152
7 CASP authKW 150971 1% 77% 116
8 THREADING authKW 137413 1% 61% 133
9 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 130329 16% 3% 2906
10 STRUCTURE PREDICTION authKW 128143 1% 32% 237

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 130329 16% 3% 2906
2 Biophysics 68193 22% 1% 4148
3 Biochemistry & Molecular Biology 62979 49% 1% 9014
4 Biochemical Research Methods 48576 18% 1% 3268
5 Computer Science, Interdisciplinary Applications 35655 12% 1% 2292
6 Biotechnology & Applied Microbiology 11125 12% 0% 2160
7 Chemistry, Medicinal 9994 8% 1% 1402
8 Computer Science, Information Systems 4188 5% 0% 841
9 Chemistry, Multidisciplinary 3187 11% 0% 2116
10 Biology 1570 3% 0% 614

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 SACKLER MOL MED 84281 1% 37% 133
2 BIOINFORMAT 59710 4% 5% 727
3 STUDY SYST BIOL 55080 0% 59% 55
4 COMPUTAT MUTAT PROJECT 48199 0% 89% 32
5 CUBIC 46840 0% 63% 44
6 BAKER CHEM CHEM BIOL 42953 0% 30% 86
7 LH BAKER BIOINFORMAT BIOL STAT 40247 0% 61% 39
8 PL MOL ENGN 39096 0% 77% 30
9 HUMAN GENET MOL MED 38850 1% 21% 109
10 EXPT COMPUTAT BIOL 35045 0% 25% 84

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 747736 9% 26% 1698
2 JOURNAL OF CHEMICAL INFORMATION AND MODELING 220299 4% 20% 651
3 BIOINFORMATICS 123384 5% 8% 908
4 JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN 118499 2% 20% 357
5 BMC BIOINFORMATICS 77255 3% 8% 601
6 PROTEIN ENGINEERING 66166 2% 13% 298
7 PROTEIN SCIENCE 61966 3% 8% 486
8 JOURNAL OF COMPUTATIONAL CHEMISTRY 59416 3% 8% 472
9 BMC STRUCTURAL BIOLOGY 51109 1% 24% 124
10 PROTEIN AND PEPTIDE LETTERS 34024 1% 9% 230

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PROTEIN STRUCTURE PREDICTION 653429 3% 66% 582 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
2 PSEUDO AMINO ACID COMPOSITION 195710 1% 94% 123 Search PSEUDO+AMINO+ACID+COMPOSITION Search PSEUDO+AMINO+ACID+COMPOSITION
3 SCORING FUNCTION 194884 1% 60% 191 Search SCORING+FUNCTION Search SCORING+FUNCTION
4 FOLD RECOGNITION 173156 1% 67% 152 Search FOLD+RECOGNITION Search FOLD+RECOGNITION
5 CASP 150971 1% 77% 116 Search CASP Search CASP
6 THREADING 137413 1% 61% 133 Search THREADING Search THREADING
7 STRUCTURE PREDICTION 128143 1% 32% 237 Search STRUCTURE+PREDICTION Search STRUCTURE+PREDICTION
8 VIRTUAL SCREENING 116689 2% 18% 390 Search VIRTUAL+SCREENING Search VIRTUAL+SCREENING
9 ELASTIC NETWORK MODEL 110455 0% 72% 91 Search ELASTIC+NETWORK+MODEL Search ELASTIC+NETWORK+MODEL
10 KNOWLEDGE BASED POTENTIALS 105742 0% 81% 77 Search KNOWLEDGE+BASED+POTENTIALS Search KNOWLEDGE+BASED+POTENTIALS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 2461 HP MODEL//ENHANCED SAMPLING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION
2 924 PROTEIN FOLDING//MOLTEN GLOBULE//FOLDING INTERMEDIATE
3 756 MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS
4 747 BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS
5 2508 PHOSPHOPROTEOMICS//PHOSPHOPEPTIDES//INTRINSICALLY DISORDERED PROTEINS
6 517 QSAR//JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES//QSPR
7 3164 HYDRATION WATER//PROTEIN HYDRATION//DYNAMICAL TRANSITION
8 3768 ANTISTREPTOKINASE ANTIBODY//B CELL EPITOPE PREDICTION//PREDETERMINED SPECIFICITY
9 269 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY
10 1983 ACTA CRYSTALLOGRAPHICA SECTION A//JOURNAL OF APPLIED CRYSTALLOGRAPHY//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

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