Class information for:
Level 1: COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
13540 1                   COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION 860

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 COMPUTATIONAL PROTEIN DESIGN authKW 1970719 9% 66% 81
2 PROTEIN DESIGN authKW 759777 16% 15% 137
3 DEAD END ELIMINATION authKW 669517 3% 70% 26
4 COMPUTATIONAL ENZYME DESIGN authKW 551844 2% 94% 16
5 ROTAMER LIBRARY authKW 371025 2% 56% 18
6 SIDE CHAIN PREDICTION authKW 281497 2% 59% 13
7 ENZYME DESIGN authKW 252705 2% 34% 20
8 FLEXIBLE BACKBONE DESIGN authKW 219876 1% 100% 6
9 ACTIVE SITE RECAPITULATION authKW 183230 1% 100% 5
10 SIDE CHAIN PLACEMENT authKW 180405 1% 62% 8

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Biochemistry & Molecular Biology 5661 65% 0% 563
2 Biophysics 2656 21% 0% 177
3 Mathematical & Computational Biology 1476 8% 0% 68
4 Biochemical Research Methods 940 12% 0% 101
5 Biotechnology & Applied Microbiology 258 9% 0% 75
6 Chemistry, Multidisciplinary 232 13% 0% 115
7 Computer Science, Interdisciplinary Applications 168 4% 0% 38
8 Cell Biology 87 7% 0% 62
9 Statistics & Probability 25 2% 0% 16
10 Physics, Atomic, Molecular & Chemical 7 3% 0% 22

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 INTERDISCIPLINARY PROGRAM BIOMOL STRUCT DESIGN 82452 0% 75% 3
2 IGPPEB 73292 0% 100% 2
3 BIOCHEM MOL BIOPHYS OPT 47113 0% 43% 3
4 CHANDLEE 41223 0% 38% 3
5 BIOCHEM BIOMOL STRUCT DESIGN BMSD 36646 0% 100% 1
6 BIOCHEM OPT BIOL 36646 0% 100% 1
7 BIOCHEM OPT CHEM 36646 0% 100% 1
8 BIOCHEM OPT CHEM ENGN 36646 0% 100% 1
9 BIOINFORMAT 2 36646 0% 100% 1
10 BIOL SYST SYNTH 36646 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 33208 9% 1% 77
2 PROTEIN SCIENCE 30523 8% 1% 73
3 JOURNAL OF COMPUTATIONAL CHEMISTRY 12832 5% 1% 47
4 PROTEIN ENGINEERING DESIGN & SELECTION 10818 2% 2% 18
5 CURRENT OPINION IN STRUCTURAL BIOLOGY 9755 3% 1% 25
6 JOURNAL OF MOLECULAR BIOLOGY 9706 9% 0% 79
7 CURRENT OPINION IN CHEMICAL BIOLOGY 4258 2% 1% 15
8 PROTEIN ENGINEERING 3623 2% 1% 15
9 JOURNAL OF COMPUTATIONAL BIOLOGY 3242 1% 1% 12
10 STRUCTURE 2679 2% 0% 17

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 COMPUTATIONAL PROTEIN DESIGN 1970719 9% 66% 81 Search COMPUTATIONAL+PROTEIN+DESIGN Search COMPUTATIONAL+PROTEIN+DESIGN
2 PROTEIN DESIGN 759777 16% 15% 137 Search PROTEIN+DESIGN Search PROTEIN+DESIGN
3 DEAD END ELIMINATION 669517 3% 70% 26 Search DEAD+END+ELIMINATION Search DEAD+END+ELIMINATION
4 COMPUTATIONAL ENZYME DESIGN 551844 2% 94% 16 Search COMPUTATIONAL+ENZYME+DESIGN Search COMPUTATIONAL+ENZYME+DESIGN
5 ROTAMER LIBRARY 371025 2% 56% 18 Search ROTAMER+LIBRARY Search ROTAMER+LIBRARY
6 SIDE CHAIN PREDICTION 281497 2% 59% 13 Search SIDE+CHAIN+PREDICTION Search SIDE+CHAIN+PREDICTION
7 ENZYME DESIGN 252705 2% 34% 20 Search ENZYME+DESIGN Search ENZYME+DESIGN
8 FLEXIBLE BACKBONE DESIGN 219876 1% 100% 6 Search FLEXIBLE+BACKBONE+DESIGN Search FLEXIBLE+BACKBONE+DESIGN
9 ACTIVE SITE RECAPITULATION 183230 1% 100% 5 Search ACTIVE+SITE+RECAPITULATION Search ACTIVE+SITE+RECAPITULATION
10 SIDE CHAIN PLACEMENT 180405 1% 62% 8 Search SIDE+CHAIN+PLACEMENT Search SIDE+CHAIN+PLACEMENT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 38035 COMPSTATIN//STELLAR CHANCE S 401//COMPSTATIN ANALOGS
2 33482 LINEAR BINDING MOTIFS//ROSETTA FLEXPEPDOCK//COMPUTATIONAL PEPTIDOLOGY
3 5114 COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN
4 600 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP
5 6486 CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING
6 25932 BETA ANNULUS PEPTIDE//SPHERICAL VIRUS//COMPLEMENTARY HYDROGEN BOND
7 10442 DIRECTED EVOLUTION//DNA SHUFFLING//RANDOM MUTAGENESIS
8 21152 RCSB PROT DATA BANK//PROT DATA BANK EUROPE PDBE//INTEGRAT PROTE
9 18374 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//INNATE TEMPERATURE INVARIANT ENTHALPY
10 4506 POISSON BOLTZMANN EQUATION//POISSON BOLTZMANN//IMPLICIT SOLVENT MODEL

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