Class information for:
Level 1: RCSB PROT DATA BANK//PROT DATA BANK EUROPE PDBE//INTEGRAT PROTE

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
21152 1                   RCSB PROT DATA BANK//PROT DATA BANK EUROPE PDBE//INTEGRAT PROTE 454

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RCSB PROT DATA BANK address 658185 4% 59% 16
2 PROT DATA BANK EUROPE PDBE address 277677 1% 100% 4
3 INTEGRAT PROTE address 274263 4% 22% 18
4 PDBJ address 247923 1% 71% 5
5 BIOMAG BANK address 212589 2% 44% 7
6 PROT DATA BANK J AN address 208258 1% 100% 3
7 RCSB PDB address 192827 1% 56% 5
8 STRUCTURE VALIDATION authKW 161516 2% 21% 11
9 X RAY REFINEMENT authKW 157766 1% 45% 5
10 BIOMOLECULAR CRYSTALLOGRAPHY authKW 138839 0% 100% 2

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Crystallography 10766 41% 0% 187
2 Biophysics 6580 43% 0% 196
3 Biochemical Research Methods 5269 36% 0% 163
4 Biochemistry & Molecular Biology 3299 69% 0% 311
5 Mathematical & Computational Biology 428 6% 0% 27
6 Cell Biology 86 9% 0% 41
7 Computer Science, Interdisciplinary Applications 78 4% 0% 19
8 Chemistry, Multidisciplinary 62 11% 0% 48
9 Biotechnology & Applied Microbiology 12 4% 0% 17
10 Literature, Romance 2 0% 0% 1

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RCSB PROT DATA BANK 658185 4% 59% 16
2 PROT DATA BANK EUROPE PDBE 277677 1% 100% 4
3 INTEGRAT PROTE 274263 4% 22% 18
4 PDBJ 247923 1% 71% 5
5 BIOMAG BANK 212589 2% 44% 7
6 PROT DATA BANK J AN 208258 1% 100% 3
7 RCSB PDB 192827 1% 56% 5
8 PROT DATA BANK J AN PDBJ 138839 0% 100% 2
9 SKAGGS PHARMACOL SCI 138839 0% 100% 2
10 UPPSALA MULTIDISCIPLINARY ADV COMPUTAT METHOD 138839 0% 100% 2

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY 101910 11% 3% 49
2 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 81090 15% 2% 69
3 STRUCTURE 10195 5% 1% 24
4 ACTA CRYSTALLOGRAPHICA SECTION A 8359 4% 1% 16
5 JOURNAL OF APPLIED CRYSTALLOGRAPHY 5312 5% 0% 21
6 CURRENT OPINION IN STRUCTURAL BIOLOGY 3574 2% 0% 11
7 IUCRJ 2796 1% 1% 3
8 PROTEINS-STRUCTURE FUNCTION AND GENETICS 2494 1% 1% 4
9 PROTEIN SCIENCE 2423 3% 0% 15
10 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 1563 1% 1% 4

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 STRUCTURE VALIDATION 161516 2% 21% 11 Search STRUCTURE+VALIDATION Search STRUCTURE+VALIDATION
2 X RAY REFINEMENT 157766 1% 45% 5 Search X+RAY+REFINEMENT Search X+RAY+REFINEMENT
3 BIOMOLECULAR CRYSTALLOGRAPHY 138839 0% 100% 2 Search BIOMOLECULAR+CRYSTALLOGRAPHY Search BIOMOLECULAR+CRYSTALLOGRAPHY
4 GEOMETRY RESTRAINTS 138839 0% 100% 2 Search GEOMETRY+RESTRAINTS Search GEOMETRY+RESTRAINTS
5 IDEAL GEOMETRY 138839 0% 100% 2 Search IDEAL+GEOMETRY Search IDEAL+GEOMETRY
6 LIQUID LIKE MOTIONS 138839 0% 100% 2 Search LIQUID+LIKE+MOTIONS Search LIQUID+LIKE+MOTIONS
7 OMEGA ANGLES 138839 0% 100% 2 Search OMEGA+ANGLES Search OMEGA+ANGLES
8 PDB_REDO 138839 0% 100% 2 Search PDB_REDO Search PDB_REDO
9 PROTEIN GEOMETRY CONFORMATION 138839 0% 100% 2 Search PROTEIN+GEOMETRY+CONFORMATION Search PROTEIN+GEOMETRY+CONFORMATION
10 STEREOCHEMICAL RESTRAINTS 138839 0% 100% 2 Search STEREOCHEMICAL+RESTRAINTS Search STEREOCHEMICAL+RESTRAINTS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 3226 MACROMOLECULAR CRYSTALLOGRAPHY//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY//ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
2 7390 ACTA CRYSTALLOGRAPHICA SECTION A//ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
3 25629 DRUG DESIGN BIOTECHNOL//BIDENTATION//COMPRESSED ANGLE
4 38024 C ALPHA TRACE PROBLEM//FEDERAT DENIS POISSONUMR 6083//MATH PHYS THEORFEDERAT DENIS POISSON
5 30668 ENZYME CRYSTALS//LYSOZYME CRYSTAL//HIGH INTENS XRAY DIFFRACT
6 5300 ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL
7 13540 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
8 12510 JOURNAL OF BIOMOLECULAR NMR//CYANA//AUTOMATED ASSIGNMENT
9 31062 MOLECULAR VISUALIZATION//BIOMED HLTH INFORMAT PROGRAM//SPATIAL DISTANCE HISTOGRAM
10 21120 CHEMICAL ONTOLOGY//JCAMP DX//VIRTUAL MOL SCI

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