Class information for:
Level 1: ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
5300 1                   ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL 1674

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 ELASTIC NETWORK MODEL authKW 1021116 5% 65% 83
2 NORMAL MODE ANALYSIS authKW 601099 7% 29% 109
3 GAUSSIAN NETWORK MODEL authKW 385048 2% 68% 30
4 LH BAKER BIOINFORMAT BIOL STAT address 198814 2% 41% 26
5 ELASTIC NETWORK authKW 153730 1% 58% 14
6 SACKLER MOL MED address 127240 3% 14% 49
7 PROTEIN STRUCTURE NETWORKS authKW 122353 1% 50% 13
8 HINGE BENDING authKW 102477 1% 39% 14
9 B FACTORS authKW 93558 1% 38% 13
10 MOL STRUCT SECT address 87433 1% 39% 12

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Biophysics 11745 30% 0% 509
2 Mathematical & Computational Biology 6619 12% 0% 198
3 Biochemistry & Molecular Biology 4999 46% 0% 768
4 Biochemical Research Methods 1717 11% 0% 191
5 Physics, Atomic, Molecular & Chemical 1088 11% 0% 186
6 Chemistry, Physical 633 16% 0% 263
7 Computer Science, Interdisciplinary Applications 492 5% 0% 88
8 Biotechnology & Applied Microbiology 139 5% 0% 90
9 Chemistry, Multidisciplinary 95 8% 0% 135
10 Crystallography 91 3% 0% 44

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 LH BAKER BIOINFORMAT BIOL STAT 198814 2% 41% 26
2 SACKLER MOL MED 127240 3% 14% 49
3 MOL STRUCT SECT 87433 1% 39% 12
4 HUMAN GENET MOL MED 77115 3% 9% 46
5 BAKER BIOINFORMAT BIOL SCI 75302 0% 100% 4
6 BIOINFORMAT THEO BIOL GRP 37651 0% 100% 2
7 COMPUTAT PHARMACEUT CHEM GRP 37651 0% 100% 2
8 L H BAKER BIOINFORMAT BIOL STAT 37651 0% 100% 2
9 ITP SB 37647 0% 50% 4
10 CANC NANOBIOL PROGRAM 37615 1% 10% 20

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 68250 9% 2% 154
2 PHYSICAL BIOLOGY 17834 2% 3% 29
3 BIOPHYSICAL JOURNAL 14774 7% 1% 125
4 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 13285 4% 1% 59
5 PROTEINS-STRUCTURE FUNCTION AND GENETICS 10824 1% 4% 16
6 PLOS COMPUTATIONAL BIOLOGY 10480 3% 1% 53
7 CURRENT OPINION IN STRUCTURAL BIOLOGY 7684 2% 1% 31
8 BMC STRUCTURAL BIOLOGY 7236 1% 3% 14
9 JOURNAL OF MOLECULAR GRAPHICS & MODELLING 6305 2% 1% 26
10 JOURNAL OF COMPUTATIONAL CHEMISTRY 5219 3% 1% 42

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 ELASTIC NETWORK MODEL 1021116 5% 65% 83 Search ELASTIC+NETWORK+MODEL Search ELASTIC+NETWORK+MODEL
2 NORMAL MODE ANALYSIS 601099 7% 29% 109 Search NORMAL+MODE+ANALYSIS Search NORMAL+MODE+ANALYSIS
3 GAUSSIAN NETWORK MODEL 385048 2% 68% 30 Search GAUSSIAN+NETWORK+MODEL Search GAUSSIAN+NETWORK+MODEL
4 ELASTIC NETWORK 153730 1% 58% 14 Search ELASTIC+NETWORK Search ELASTIC+NETWORK
5 PROTEIN STRUCTURE NETWORKS 122353 1% 50% 13 Search PROTEIN+STRUCTURE+NETWORKS Search PROTEIN+STRUCTURE+NETWORKS
6 HINGE BENDING 102477 1% 39% 14 Search HINGE+BENDING Search HINGE+BENDING
7 B FACTORS 93558 1% 38% 13 Search B+FACTORS Search B+FACTORS
8 NETWORK RIGIDITY 84712 0% 75% 6 Search NETWORK+RIGIDITY Search NETWORK+RIGIDITY
9 PROTEIN DYNAMICS 81947 4% 6% 75 Search PROTEIN+DYNAMICS Search PROTEIN+DYNAMICS
10 MEAN SQUARE FLUCTUATIONS 78438 0% 83% 5 Search MEAN+SQUARE+FLUCTUATIONS Search MEAN+SQUARE+FLUCTUATIONS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 21152 RCSB PROT DATA BANK//PROT DATA BANK EUROPE PDBE//INTEGRAT PROTE
2 21460 MULTIPLE TIME STEP//SHAKE//SYMPLECTIC INTEGRATION METHODS
3 31062 MOLECULAR VISUALIZATION//BIOMED HLTH INFORMAT PROGRAM//SPATIAL DISTANCE HISTOGRAM
4 6229 MARKOV STATE MODEL//ENHANCED SAMPLING//IST SCI COMPUTAZ
5 14580 ADENYLATE KINASE//CHIM STRUCT MACROMOL//THYMIDYLATE KINASE
6 7152 HYDRATION WATER//DYNAMICAL TRANSITION//PROTEIN HYDRATION
7 18783 INVERSE ISING PROBLEM//CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS
8 6486 CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING
9 4960 CROSS CORRELATED RELAXATION//JOURNAL OF BIOMOLECULAR NMR//N 15 RELAXATION
10 33912 CELL VIRUS THEORY//NON LINEAR HYDRODYNAMIC EQUATIONS//ALL ATOM MULTISCALE

Go to start page