Class information for:
Level 1: INVERSE ISING PROBLEM//CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
18783 1                   INVERSE ISING PROBLEM//CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS 560

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 INVERSE ISING PROBLEM authKW 281394 1% 100% 5
2 CORRELATED MUTATIONS authKW 257041 2% 35% 13
3 DIRECT COUPLING ANALYSIS authKW 175868 1% 63% 5
4 BIOL COMPUTAT QUANTITAT BIOL PARIS SEINE address 168837 1% 100% 3
5 COEVOLVING RESIDUES authKW 168837 1% 100% 3
6 CORRELATED SUBSTITUTIONS authKW 168837 1% 100% 3
7 RESIDUE COVARIATION authKW 168837 1% 100% 3
8 AMINO ACID CONTACTS authKW 126626 1% 75% 3
9 COEVOLUTION ANALYSIS authKW 126626 1% 75% 3
10 INFERENCE OF GRAPHICAL MODELS authKW 126626 1% 75% 3

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 6720 20% 0% 114
2 Biochemical Research Methods 2183 21% 0% 119
3 Physics, Mathematical 1442 15% 0% 82
4 Biochemistry & Molecular Biology 662 31% 0% 173
5 Biotechnology & Applied Microbiology 601 15% 0% 84
6 Computer Science, Artificial Intelligence 392 8% 0% 42
7 Physics, Fluids & Plasmas 272 6% 0% 33
8 Evolutionary Biology 233 5% 0% 26
9 Biophysics 152 7% 0% 39
10 Physics, Multidisciplinary 137 9% 0% 49

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOL COMPUTAT QUANTITAT BIOL PARIS SEINE 168837 1% 100% 3
2 GENOM MICROORGANISMES 116177 1% 26% 8
3 UMR 7238 90756 2% 16% 10
4 EVOLUTIONARY GENET BIOINFORMAT 75033 1% 33% 4
5 TAO INRIA 63310 1% 38% 3
6 ACCESS LINNAEUS KTH 56279 0% 100% 1
7 BIOINFORMAT GRP COMP SCI 56279 0% 100% 1
8 BIOL COMP VISUAL 56279 0% 100% 1
9 BIOL S 1008 56279 0% 100% 1
10 CKS AERONAUT METEOROL STN 56279 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT 8636 4% 1% 24
2 BIOINFORMATICS 7979 7% 0% 40
3 PLOS COMPUTATIONAL BIOLOGY 5408 4% 0% 22
4 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 4525 4% 0% 23
5 BMC BIOINFORMATICS 4453 4% 0% 25
6 MOLECULAR BIOLOGY AND EVOLUTION 2177 3% 0% 15
7 NEURAL NETWORKS 2090 2% 0% 11
8 NEURAL COMPUTATION 1746 2% 0% 9
9 EVOLUTIONARY BIOINFORMATICS 1497 1% 1% 3
10 PROTEIN ENGINEERING 1208 1% 0% 7

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 INVERSE ISING PROBLEM 281394 1% 100% 5 Search INVERSE+ISING+PROBLEM Search INVERSE+ISING+PROBLEM
2 CORRELATED MUTATIONS 257041 2% 35% 13 Search CORRELATED+MUTATIONS Search CORRELATED+MUTATIONS
3 DIRECT COUPLING ANALYSIS 175868 1% 63% 5 Search DIRECT+COUPLING+ANALYSIS Search DIRECT+COUPLING+ANALYSIS
4 COEVOLVING RESIDUES 168837 1% 100% 3 Search COEVOLVING+RESIDUES Search COEVOLVING+RESIDUES
5 CORRELATED SUBSTITUTIONS 168837 1% 100% 3 Search CORRELATED+SUBSTITUTIONS Search CORRELATED+SUBSTITUTIONS
6 RESIDUE COVARIATION 168837 1% 100% 3 Search RESIDUE+COVARIATION Search RESIDUE+COVARIATION
7 AMINO ACID CONTACTS 126626 1% 75% 3 Search AMINO+ACID+CONTACTS Search AMINO+ACID+CONTACTS
8 COEVOLUTION ANALYSIS 126626 1% 75% 3 Search COEVOLUTION+ANALYSIS Search COEVOLUTION+ANALYSIS
9 INFERENCE OF GRAPHICAL MODELS 126626 1% 75% 3 Search INFERENCE+OF+GRAPHICAL+MODELS Search INFERENCE+OF+GRAPHICAL+MODELS
10 STATISTICAL SEQUENCE ANALYSIS 126626 1% 75% 3 Search STATISTICAL+SEQUENCE+ANALYSIS Search STATISTICAL+SEQUENCE+ANALYSIS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 600 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP
2 9932 CAVITY AND REPLICA METHOD//MESSAGE PASSING ALGORITHMS//NEURAL COMP GRP
3 36260 ANCESTRAL RESIDUE//COMMONOTE//PROTEIN RESURRECTION
4 5300 ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL
5 18345 RESTRICTED BOLTZMANN MACHINE//DEEP LEARNING//AUTOENCODER
6 8231 PROTEIN FUNCTION PREDICTION//3D ZERNIKE DESCRIPTOR//COMPLEX SCI SOFTWARE
7 24942 MEAN FIELD VARIATIONAL BAYES//EXPECTATION PROPAGATION//GAUSSIAN BELIEF PROPAGATION GABP
8 36315 ATOH8//BLAST SEARCH//BHLH GENE FAMILY
9 3379 ASSOCIATIVE MEMORY//HOPFIELD MODEL//BIDIRECTIONAL ASSOCIATIVE MEMORY
10 6486 CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING

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