Class information for:
Level 1: PROTEIN FUNCTION PREDICTION//3D ZERNIKE DESCRIPTOR//COMPLEX SCI SOFTWARE

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
318 2             PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//JOURNAL OF CHEMICAL INFORMATION AND MODELING 18575
8231 1                   PROTEIN FUNCTION PREDICTION//3D ZERNIKE DESCRIPTOR//COMPLEX SCI SOFTWARE 1303

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PROTEIN FUNCTION PREDICTION authKW 284257 3% 29% 41
2 3D ZERNIKE DESCRIPTOR authKW 186043 1% 77% 10
3 COMPLEX SCI SOFTWARE address 178095 1% 82% 9
4 PHYLOGENETIC MOTIFS authKW 145117 0% 100% 6
5 THEMATICS authKW 130598 1% 60% 9
6 PROTEIN SURFACE authKW 124704 1% 27% 19
7 PROTEIN SURFACE SHAPE authKW 124385 0% 86% 6
8 STRUCTURE BASED FUNCTION PREDICTION authKW 124385 0% 86% 6
9 FUNCTIONAL SITE PREDICTION authKW 110559 1% 57% 8
10 BINDING SITE COMPARISON authKW 100774 0% 83% 5

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 28729 27% 0% 358
2 Biochemical Research Methods 9361 28% 0% 371
3 Biochemistry & Molecular Biology 4303 48% 0% 625
4 Biotechnology & Applied Microbiology 3636 23% 0% 302
5 Computer Science, Interdisciplinary Applications 2676 13% 0% 166
6 Biophysics 1917 15% 0% 190
7 Chemistry, Medicinal 1132 9% 0% 122
8 Computer Science, Information Systems 641 6% 0% 83
9 Chemistry, Multidisciplinary 98 9% 0% 114
10 Statistics & Probability 93 3% 0% 34

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 COMPLEX SCI SOFTWARE 178095 1% 82% 9
2 GLOBAL COMPUTAT CHEM 79150 0% 55% 6
3 STUDY SYST BIOL 75132 1% 18% 17
4 MOL BIOINFORMAT 65842 1% 17% 16
5 BIOMED SCI COMPLEX EASTCHEM CHEM 48372 0% 100% 2
6 MPI COMPUTAT BIOL 48372 0% 100% 2
7 CIBR COMPUTAT INTEGRAT BIOMED 32247 0% 67% 2
8 OPEN SOURCE DRUG DISCOVERY OSDD CONSORTIUM 32247 0% 67% 2
9 MEDALIS DRUG DISCOVERY 27636 0% 29% 4
10 ADV IT DEV 24186 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC BIOINFORMATICS 37245 8% 1% 110
2 JOURNAL OF CHEMICAL INFORMATION AND MODELING 34331 5% 2% 68
3 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 32628 7% 1% 94
4 BIOINFORMATICS 31976 9% 1% 122
5 BMC STRUCTURAL BIOLOGY 12157 1% 3% 16
6 NUCLEIC ACIDS RESEARCH 9059 10% 0% 124
7 JOURNAL OF MOLECULAR BIOLOGY 8086 7% 0% 89
8 PLOS COMPUTATIONAL BIOLOGY 6554 3% 1% 37
9 PROTEIN SCIENCE 4851 3% 1% 36
10 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 4424 1% 1% 15

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PROTEIN FUNCTION PREDICTION 284257 3% 29% 41 Search PROTEIN+FUNCTION+PREDICTION Search PROTEIN+FUNCTION+PREDICTION
2 3D ZERNIKE DESCRIPTOR 186043 1% 77% 10 Search 3D+ZERNIKE+DESCRIPTOR Search 3D+ZERNIKE+DESCRIPTOR
3 PHYLOGENETIC MOTIFS 145117 0% 100% 6 Search PHYLOGENETIC+MOTIFS Search PHYLOGENETIC+MOTIFS
4 THEMATICS 130598 1% 60% 9 Search THEMATICS Search THEMATICS
5 PROTEIN SURFACE 124704 1% 27% 19 Search PROTEIN+SURFACE Search PROTEIN+SURFACE
6 PROTEIN SURFACE SHAPE 124385 0% 86% 6 Search PROTEIN+SURFACE+SHAPE Search PROTEIN+SURFACE+SHAPE
7 STRUCTURE BASED FUNCTION PREDICTION 124385 0% 86% 6 Search STRUCTURE+BASED+FUNCTION+PREDICTION Search STRUCTURE+BASED+FUNCTION+PREDICTION
8 FUNCTIONAL SITE PREDICTION 110559 1% 57% 8 Search FUNCTIONAL+SITE+PREDICTION Search FUNCTIONAL+SITE+PREDICTION
9 BINDING SITE COMPARISON 100774 0% 83% 5 Search BINDING+SITE+COMPARISON Search BINDING+SITE+COMPARISON
10 PROTEIN FUNCTION 99355 3% 11% 39 Search PROTEIN+FUNCTION Search PROTEIN+FUNCTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 6983 PROTEIN STRUCTURE ALIGNMENT//PROTEIN STRUCTURE COMPARISON//PROTEIN FOLD
2 27004 MANDELATE RACEMASE//ENOLASE SUPERFAMILY//MANDELATE RACEMASE EC 5122
3 6486 CAPRI//PROTEIN PROTEIN DOCKING//PROTEIN DOCKING
4 25629 DRUG DESIGN BIOTECHNOL//BIDENTATION//COMPRESSED ANGLE
5 22669 CLOSED LOOPS//EVOLUTIONARY BIOINFORMAT//GENOME ERS
6 1311 JOURNAL OF CHEMICAL INFORMATION AND MODELING//VIRTUAL SCREENING//JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
7 24356 GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN
8 17375 INTERACTION PROPENSITY//DNA BINDING RESIDUES//RNA BINDING RESIDUES
9 14767 EMBL OUTSTN//HLTH SCI TECHNOL ICIR//J AN INT PROT INFORMAT DATABASE
10 600 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//CASP

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