Class information for:
Level 1: GENE SET ANALYSIS//BMC BIOINFORMATICS//BIOINFORMATICS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
133 3       BIOCHEMICAL RESEARCH METHODS//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//PROTEOMICS 67621
756 2             MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS 12852
9272 1                   GENE SET ANALYSIS//BMC BIOINFORMATICS//BIOINFORMATICS 1202

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GENE SET ANALYSIS authKW 472244 3% 49% 37
2 BMC BIOINFORMATICS journal 133859 17% 3% 200
3 BIOINFORMATICS journal 110065 18% 2% 217
4 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 92350 51% 1% 613
5 PATHWAY ANALYSIS authKW 80915 4% 7% 47
6 GENE SET authKW 79104 1% 23% 13
7 GENE SET ENRICHMENT authKW 77100 1% 29% 10
8 DYSREGULATED PATHWAYS authKW 59925 0% 57% 4
9 ENRICHMENT ANALYSIS authKW 59371 1% 14% 16
10 DIFFERENTIAL PATHWAY authKW 58991 0% 75% 3

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 92350 51% 1% 613
2 Biochemical Research Methods 25135 48% 0% 575
3 Biotechnology & Applied Microbiology 16122 49% 0% 587
4 Genetics & Heredity 934 13% 0% 153
5 Biochemistry & Molecular Biology 604 22% 0% 265
6 Statistics & Probability 592 6% 0% 71
7 Medical Informatics 318 2% 0% 26
8 Computer Science, Interdisciplinary Applications 194 4% 0% 49
9 Multidisciplinary Sciences 175 2% 0% 28
10 Biology 43 2% 0% 29

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMAT FUNCT GENOM NODE INB 52437 0% 100% 2
2 COMPUTAT SYST BIOL CANC 52437 0% 100% 2
3 HOLM GRP 52437 0% 100% 2
4 NIAID OFF TECHNOL INFORMAT SYST 52437 0% 100% 2
5 BIOINFORMAT BIGCAT 51151 1% 18% 11
6 FUNCT GENOM NODE 45339 1% 22% 8
7 COMPLEJIDAD BIOL SISTEMAS 34957 0% 67% 2
8 BIOPHARMACEUT INFORMAT TECHNOL 29492 0% 38% 3
9 INB 28020 1% 8% 13
10 COMPUTAT BIOL MACHINE LEARNING 27917 1% 15% 7

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC BIOINFORMATICS 133859 17% 3% 200
2 BIOINFORMATICS 110065 18% 2% 217
3 BMC SYSTEMS BIOLOGY 9810 2% 2% 25
4 NUCLEIC ACIDS RESEARCH 8900 10% 0% 118
5 BRIEFINGS IN BIOINFORMATICS 7774 1% 2% 15
6 STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY 7182 1% 2% 12
7 BMC GENOMICS 4088 3% 0% 40
8 BIODATA MINING 2853 0% 2% 5
9 GENOME BIOLOGY 2713 1% 1% 18
10 PLOS COMPUTATIONAL BIOLOGY 2496 2% 0% 22

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 GENE SET ANALYSIS 472244 3% 49% 37 Search GENE+SET+ANALYSIS Search GENE+SET+ANALYSIS
2 PATHWAY ANALYSIS 80915 4% 7% 47 Search PATHWAY+ANALYSIS Search PATHWAY+ANALYSIS
3 GENE SET 79104 1% 23% 13 Search GENE+SET Search GENE+SET
4 GENE SET ENRICHMENT 77100 1% 29% 10 Search GENE+SET+ENRICHMENT Search GENE+SET+ENRICHMENT
5 DYSREGULATED PATHWAYS 59925 0% 57% 4 Search DYSREGULATED+PATHWAYS Search DYSREGULATED+PATHWAYS
6 ENRICHMENT ANALYSIS 59371 1% 14% 16 Search ENRICHMENT+ANALYSIS Search ENRICHMENT+ANALYSIS
7 DIFFERENTIAL PATHWAY 58991 0% 75% 3 Search DIFFERENTIAL+PATHWAY Search DIFFERENTIAL+PATHWAY
8 PATHWAY TOPOLOGY 58991 0% 75% 3 Search PATHWAY+TOPOLOGY Search PATHWAY+TOPOLOGY
9 DYSREGULATED PATHWAY IDENTIFICATION 52437 0% 100% 2 Search DYSREGULATED+PATHWAY+IDENTIFICATION Search DYSREGULATED+PATHWAY+IDENTIFICATION
10 FSNET 52437 0% 100% 2 Search FSNET Search FSNET

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 24356 GENE ONTOLOGY//SEMANTIC SIMILARITY//CXC DOMAIN
2 15781 WEIGHTED GENE CO EXPRESSION NETWORK ANALYSIS//GENE CO EXPRESSION NETWORK//CO EXPRESSION NETWORK ANALYSIS
3 1602 FALSE DISCOVERY RATE//MULTIPLE TESTING//MULTIPLE HYPOTHESIS TESTING
4 17901 DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK//GENE PRIORITIZATION
5 594 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
6 13044 CANCER GENOME//DRIVER GENE//PRECIS HLTH
7 2260 GENE SELECTION//CANCER CLASSIFICATION//BICLUSTERING
8 4203 JOURNAL OF BIOMEDICAL SEMANTICS//DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION//ZFIN
9 20498 FIELD OF INJURY//LUNG CANCER DIAGNOSIS AND PROGNOSIS//AFFYMETRIX EXON ARRAYS
10 22518 DIALYSIS BIOREACTOR//DOUBLE THYMIDINE BLOCK//JUST IN TIME ASSEMBLY

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