Class information for:
Level 2: FLUX BALANCE ANALYSIS//METABOLIC NETWORK//PHOSPHOTRANSFERASE SYSTEM

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
393 3       METABOLOMICS//METABONOMICS//ATP SYNTHASE 32518
2138 2             FLUX BALANCE ANALYSIS//METABOLIC NETWORK//PHOSPHOTRANSFERASE SYSTEM 5379
1373 1                   FLUX BALANCE ANALYSIS//METABOLIC NETWORK//CONSTRAINT BASED MODELING 2703
3706 1                   PHOSPHOTRANSFERASE SYSTEM//HPR//PHOSPHOENOLPYRUVATE SUGAR PHOSPHOTRANSFERASE SYSTEM 1960
16831 1                   METABOLIC FLUX ANALYSIS//METAB ENGN SYST BIOL//C 13 LABELING EXPERIMENT 658
38592 1                   D RIBOSE//CAS AMINO ACIDS//FERMENT PRODUCTION 58

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 FLUX BALANCE ANALYSIS authKW 692239 3% 63% 188
2 METABOLIC NETWORK authKW 550531 4% 45% 210
3 PHOSPHOTRANSFERASE SYSTEM authKW 465965 2% 67% 118
4 CONSTRAINT BASED MODELING authKW 333884 1% 74% 77
5 METABOLIC FLUX ANALYSIS authKW 327949 3% 37% 151
6 ELEMENTARY FLUX MODES authKW 182236 1% 68% 46
7 ELEMENTARY MODES authKW 169266 1% 85% 34
8 GENOME SCALE METABOLIC MODEL authKW 167400 1% 53% 54
9 BMC SYSTEMS BIOLOGY journal 146308 4% 12% 204
10 HPR authKW 126205 1% 57% 38

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 65873 21% 1% 1106
2 Biotechnology & Applied Microbiology 24731 29% 0% 1575
3 Biochemical Research Methods 13679 17% 0% 934
4 Microbiology 12584 21% 0% 1132
5 Biochemistry & Molecular Biology 6671 32% 0% 1695
6 Biology 576 4% 0% 195
7 Genetics & Heredity 458 5% 0% 284
8 Biophysics 410 4% 0% 229
9 Computer Science, Interdisciplinary Applications 133 2% 0% 109
10 Cell Biology 73 4% 0% 222

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 METAB ENGN SYST BIOL 113877 1% 59% 33
2 URA 1925 86765 0% 74% 20
3 MIKROBIOL BIOCHEM GENET 86220 1% 41% 36
4 MICROBIAL BIOCHEM GENET UNIT 68149 0% 73% 16
5 GENET MICROORGANISMES 56899 1% 36% 27
6 COMPUTAT SYST BIOTECHNOL 50324 0% 45% 19
7 SYST BIOL MATH MODELING GRP 38429 0% 41% 16
8 METAB BIOMOL ENGN 37354 1% 19% 34
9 METABOLOME UNIT 35144 0% 100% 6
10 BIOINFORMAT TUEBINGEN ZBIT 34773 0% 42% 14

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BMC SYSTEMS BIOLOGY 146308 4% 12% 204
2 METABOLIC ENGINEERING 94651 3% 12% 135
3 BIOINFORMATICS 42919 5% 3% 288
4 MOLECULAR SYSTEMS BIOLOGY 30213 1% 8% 64
5 JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 23418 1% 7% 57
6 JOURNAL OF BACTERIOLOGY 21637 7% 1% 354
7 PLOS COMPUTATIONAL BIOLOGY 18663 2% 3% 127
8 BMC BIOINFORMATICS 12806 2% 2% 132
9 CURRENT OPINION IN BIOTECHNOLOGY 11135 1% 3% 68
10 IEE PROCEEDINGS SYSTEMS BIOLOGY 8520 0% 13% 11

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 FLUX BALANCE ANALYSIS 692239 3% 63% 188 Search FLUX+BALANCE+ANALYSIS Search FLUX+BALANCE+ANALYSIS
2 METABOLIC NETWORK 550531 4% 45% 210 Search METABOLIC+NETWORK Search METABOLIC+NETWORK
3 PHOSPHOTRANSFERASE SYSTEM 465965 2% 67% 118 Search PHOSPHOTRANSFERASE+SYSTEM Search PHOSPHOTRANSFERASE+SYSTEM
4 CONSTRAINT BASED MODELING 333884 1% 74% 77 Search CONSTRAINT+BASED+MODELING Search CONSTRAINT+BASED+MODELING
5 METABOLIC FLUX ANALYSIS 327949 3% 37% 151 Search METABOLIC+FLUX+ANALYSIS Search METABOLIC+FLUX+ANALYSIS
6 ELEMENTARY FLUX MODES 182236 1% 68% 46 Search ELEMENTARY+FLUX+MODES Search ELEMENTARY+FLUX+MODES
7 ELEMENTARY MODES 169266 1% 85% 34 Search ELEMENTARY+MODES Search ELEMENTARY+MODES
8 GENOME SCALE METABOLIC MODEL 167400 1% 53% 54 Search GENOME+SCALE+METABOLIC+MODEL Search GENOME+SCALE+METABOLIC+MODEL
9 HPR 126205 1% 57% 38 Search HPR Search HPR
10 METABOLIC MODELING 120334 1% 34% 61 Search METABOLIC+MODELING Search METABOLIC+MODELING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 2


rank cluster_id2 link
1 3086 METABOLIC CONTROL ANALYSIS//BIOCHEMICAL SYSTEMS THEORY//S SYSTEM
2 954 BOOLEAN NETWORKS//GENE REGULATORY NETWORK//GENETIC REGULATORY NETWORKS
3 756 MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS//BIOINFORMATICS
4 1198 1 3 PROPANEDIOL//CLOSTRIDIUM ACETOBUTYLICUM//2 3 BUTANEDIOL
5 1622 METABOLOMICS//METABONOMICS//METABOLIC PROFILING
6 1491 CORYNEBACTERIUM GLUTAMICUM//SHIKIMATE PATHWAY//DIHYDRODIPICOLINATE SYNTHASE
7 1638 LACTOCOCCUS LACTIS//BACILLUS SUBTILIS//JOURNAL OF BACTERIOLOGY
8 2907 EXOPOLYPHOSPHATASE//POLYPHOSPHATE//INORGANIC POLYPHOSPHATE
9 4052 APPARENT EQUILIBRIUM CONSTANTS//TRANSFORMED THERMODYNAMIC PROPERTIES//TRANSFORMED GIBBS ENERGY
10 696 BIOTECHNOLOGY AND BIOENGINEERING//BIOTECHNOLOGY & APPLIED MICROBIOLOGY//MAMMALIAN CELL CULTURE

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