Class information for:
Level 1: MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 ONCOLOGY//CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY 2934640
55 3       CELL BIOLOGY//BIOCHEMISTRY & MOLECULAR BIOLOGY//CHROMATIN 94586
1836 2             CHROMOSOME TERRITORY//CHIP SEQ//NUCLEAR ARCHITECTURE 6503
2027 1                   MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING 2420

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 MOTIF DISCOVERY authKW 423025 2% 57% 57
2 TRANSCRIPTION FACTOR BINDING SITE authKW 360211 3% 34% 82
3 MOTIF FINDING authKW 214284 1% 69% 24
4 POSITION WEIGHT MATRIX authKW 125427 1% 57% 17
5 BIOINFORMATICS journal 109237 13% 3% 307
6 UKG address 87892 0% 75% 9
7 DNA MOTIFS authKW 82315 1% 45% 14
8 BIOINFORMAT GENOMES EAUX BIGRE address 78581 1% 46% 13
9 PROMOTER PREDICTION authKW 77325 1% 42% 14
10 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 73316 32% 1% 778

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 73316 32% 1% 778
2 Biochemical Research Methods 21828 32% 0% 769
3 Biotechnology & Applied Microbiology 20389 39% 0% 945
4 Genetics & Heredity 5091 20% 0% 482
5 Biochemistry & Molecular Biology 4570 38% 0% 910
6 Computer Science, Interdisciplinary Applications 1248 7% 0% 163
7 Statistics & Probability 675 5% 0% 111
8 Computer Science, Artificial Intelligence 329 4% 0% 89
9 Computer Science, Theory & Methods 168 3% 0% 72
10 Biology 161 3% 0% 73

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 UKG 87892 0% 75% 9
2 BIOINFORMAT GENOMES EAUX BIGRE 78581 1% 46% 13
3 THEORET GENET 55504 0% 47% 9
4 HARVARD MIT HLTH SCI TECHNOL HST 41660 0% 40% 8
5 BIOINFORMAT INTELLIGENT COMP 40689 0% 63% 5
6 GRP ALGORISM GENET 39065 0% 100% 3
7 KNOWLEDGE EXTRACT 31245 0% 40% 6
8 ARCO GRP 29291 0% 38% 6
9 STUDIES PHYS BIOL 28411 1% 9% 25
10 EEBI COMP 26043 0% 100% 2

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 109237 13% 3% 307
2 NUCLEIC ACIDS RESEARCH 55025 17% 1% 414
3 BMC BIOINFORMATICS 53059 7% 2% 179
4 GENOME RESEARCH 27215 3% 3% 84
5 JOURNAL OF COMPUTATIONAL BIOLOGY 20048 2% 3% 50
6 ALGORITHMS FOR MOLECULAR BIOLOGY 13799 1% 6% 18
7 GENOME BIOLOGY 12640 2% 2% 55
8 COMPUTER APPLICATIONS IN THE BIOSCIENCES 11177 1% 3% 28
9 BMC GENOMICS 8328 3% 1% 81
10 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 7153 1% 2% 26

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 MOTIF DISCOVERY 423025 2% 57% 57 Search MOTIF+DISCOVERY Search MOTIF+DISCOVERY
2 TRANSCRIPTION FACTOR BINDING SITE 360211 3% 34% 82 Search TRANSCRIPTION+FACTOR+BINDING+SITE Search TRANSCRIPTION+FACTOR+BINDING+SITE
3 MOTIF FINDING 214284 1% 69% 24 Search MOTIF+FINDING Search MOTIF+FINDING
4 POSITION WEIGHT MATRIX 125427 1% 57% 17 Search POSITION+WEIGHT+MATRIX Search POSITION+WEIGHT+MATRIX
5 DNA MOTIFS 82315 1% 45% 14 Search DNA+MOTIFS Search DNA+MOTIFS
6 PROMOTER PREDICTION 77325 1% 42% 14 Search PROMOTER+PREDICTION Search PROMOTER+PREDICTION
7 CIS REGULATORY MODULE 57871 1% 26% 17 Search CIS+REGULATORY+MODULE Search CIS+REGULATORY+MODULE
8 TRANSCRIPTION FACTOR BINDING SITES TFBSS 54255 0% 83% 5 Search TRANSCRIPTION+FACTOR+BINDING+SITES+TFBSS Search TRANSCRIPTION+FACTOR+BINDING+SITES+TFBSS
9 MOTIF IDENTIFICATION 46503 0% 71% 5 Search MOTIF+IDENTIFICATION Search MOTIF+IDENTIFICATION
10 DE NOVO MOTIF DISCOVERY 41668 0% 80% 4 Search DE+NOVO+MOTIF+DISCOVERY Search DE+NOVO+MOTIF+DISCOVERY

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 20321 CONSERVED NON CODING ELEMENTS//ENERGY ENVIRONM BIOL COMP//SARS MARINE MOL BIOL
2 37004 OPERON PREDICTION//CONSERVED GENE PAIR//OPERON
3 35820 CLOSEST STRING PROBLEM//CLOSEST SUBSTRING//CLOSEST STRING
4 12574 CHIP SEQ//CHROMATIN IMMUNOPRECIPITATION//PEAK CALLING
5 17375 INTERACTION PROPENSITY//DNA BINDING RESIDUES//RNA BINDING RESIDUES
6 5342 GENE REGULATORY NETWORK//NETWORK INFERENCE//MATHEMATICAL & COMPUTATIONAL BIOLOGY
7 12337 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
8 4428 CHROMOSOME CONFORMATION CAPTURE//HI C//NUCL DYNAM PROGRAMME
9 21424 MKIAA//GENOME EXPLORAT GRPTSURUMI KU//GENOME EXPLORAT GRP
10 18140 NETWORK MOTIFS//TRIANGLE COUNTING//TRIANGLE LISTING

Go to start page