Class information for:
Level 1: GENOME ASSEMBLY//GENOME FINISHING//MINION

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
747 2             BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS 12946
12440 1                   GENOME ASSEMBLY//GENOME FINISHING//MINION 936

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GENOME ASSEMBLY authKW 781426 7% 37% 63
2 GENOME FINISHING authKW 206229 1% 88% 7
3 MINION authKW 183313 1% 78% 7
4 OXFORD NANOPORE authKW 168352 1% 100% 5
5 NANOPORE SEQUENCING authKW 145490 1% 39% 11
6 GIGASCIENCE journal 137410 3% 14% 29
7 DE BRUIJN GRAPH authKW 129469 2% 19% 20
8 SIMONS QUANTITAT BIOL address 124305 1% 31% 12
9 DNA FRAGMENT ASSEMBLY authKW 120248 1% 71% 5
10 GENOME SCAFFOLDING authKW 120248 1% 71% 5

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 46389 41% 0% 384
2 Biotechnology & Applied Microbiology 24389 67% 0% 631
3 Biochemical Research Methods 16672 44% 0% 414
4 Genetics & Heredity 5869 33% 0% 311
5 Biochemistry & Molecular Biology 350 20% 0% 185
6 Computer Science, Interdisciplinary Applications 235 5% 0% 46
7 Statistics & Probability 152 4% 0% 34
8 Microbiology 72 5% 0% 48
9 Multidisciplinary Sciences 26 1% 0% 11
10 Biology 20 2% 0% 19

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 SIMONS QUANTITAT BIOL 124305 1% 31% 12
2 CELL WALL BIOL UTILIZAT 67341 0% 100% 2
3 INVEST SISTEMAS INTELIGENTES 67341 0% 100% 2
4 GENOME SCI HUCK 60604 0% 60% 3
5 ALGORITHM BIOL 52433 1% 17% 9
6 AGRILIFE GENOM BIOINFORMAT 44892 0% 67% 2
7 GENOME INFORMAT SECT 40076 1% 24% 5
8 ACRF S AUSTRALIAN CANC GENOME IL 33670 0% 100% 1
9 ACRF SOUTH AUSTRALIAN CANC GENOME IL 33670 0% 100% 1
10 ADV ANALYT INFORMAT SUPPORT 33670 0% 100% 1

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GIGASCIENCE 137410 3% 14% 29
2 BIOINFORMATICS 81712 18% 1% 165
3 BMC BIOINFORMATICS 33964 10% 1% 89
4 GENOME RESEARCH 28078 6% 2% 53
5 JOURNAL OF COMPUTATIONAL BIOLOGY 17466 3% 2% 29
6 BMC GENOMICS 12326 7% 1% 61
7 GENOME BIOLOGY 10410 3% 1% 31
8 ALGORITHMS FOR MOLECULAR BIOLOGY 7050 1% 3% 8
9 BRIEFINGS IN BIOINFORMATICS 6390 1% 2% 12
10 NATURE METHODS 1869 1% 1% 10

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 GENOME ASSEMBLY 781426 7% 37% 63 Search GENOME+ASSEMBLY Search GENOME+ASSEMBLY
2 GENOME FINISHING 206229 1% 88% 7 Search GENOME+FINISHING Search GENOME+FINISHING
3 MINION 183313 1% 78% 7 Search MINION Search MINION
4 OXFORD NANOPORE 168352 1% 100% 5 Search OXFORD+NANOPORE Search OXFORD+NANOPORE
5 NANOPORE SEQUENCING 145490 1% 39% 11 Search NANOPORE+SEQUENCING Search NANOPORE+SEQUENCING
6 DE BRUIJN GRAPH 129469 2% 19% 20 Search DE+BRUIJN+GRAPH Search DE+BRUIJN+GRAPH
7 DNA FRAGMENT ASSEMBLY 120248 1% 71% 5 Search DNA+FRAGMENT+ASSEMBLY Search DNA+FRAGMENT+ASSEMBLY
8 GENOME SCAFFOLDING 120248 1% 71% 5 Search GENOME+SCAFFOLDING Search GENOME+SCAFFOLDING
9 BIONANO 107743 0% 80% 4 Search BIONANO Search BIONANO
10 LONG READS 101011 0% 100% 3 Search LONG+READS Search LONG+READS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 2086 VARIANT CALLING//NEXT GENERATION SEQUENCING//BIOINFORMATICS
2 12286 METAGENOMICS//BIOSCI RD//TCS INNOVAT S
3 32458 DNA SEQUENCE COMPRESSION//REFERENCE BASED COMPRESSION//REFERENTIAL COMPRESSION
4 35905 ANTIMICROBIAL ISTANCE MONITORING ARMOR P//ASSEMBLY BASED APPROACH//BACTERIAL WHOLE GENOME SEQUENCING
5 15472 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA
6 6435 RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY
7 12702 CHLOROPLAST GENOME//PLASTOME//PLASTID GENOME
8 16145 BIOKNOWLEDGE SYST//CARDIOVASC MOLEC CARDIOL//GENOME KNOWLEDGE DISCOVERY SYST
9 34166 CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC
10 17458 BIBAC//BAC LIBRARY//BIBAC LIBRARY

Go to start page