Class information for:
Level 1: RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY

Basic class information

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.

Cluster id	Level	Cluster label	#P
17	4	BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY	725599
226	3	GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY	49202
747	2	BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS	12946
6435	1	RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY	1513

Terms with highest relevance score

rank	Category	termType	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	RNA SEQ	authKW	674756	20%	11%	307
2	TRANSCRIPTOME ASSEMBLY	authKW	156628	1%	40%	19
3	DE NOVO ASSEMBLY	authKW	106335	2%	14%	37
4	TRANSCRIPTOME	authKW	93533	10%	3%	150
5	RNA SEQUENCING	authKW	85972	4%	7%	58
6	DIFFERENTIAL EXPRESSION ANALYSIS	authKW	76890	1%	31%	12
7	DESEQ2	authKW	66651	0%	80%	4
8	BMC GENOMICS	journal	65213	12%	2%	178
9	GENOME GUIDED TRANSCRIPTOME ASSEMBLY	authKW	62487	0%	100%	3
10	RNA SEQ DATA	authKW	48592	0%	33%	7

Web of Science journal categories

chi_square_rank	Category	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	Mathematical & Computational Biology	36061	29%	0%	432
2	Biotechnology & Applied Microbiology	24978	54%	0%	817
3	Biochemical Research Methods	13021	31%	0%	470
4	Genetics & Heredity	12116	37%	0%	565
5	Biochemistry & Molecular Biology	1075	25%	0%	381
6	Statistics & Probability	389	4%	0%	67
7	Multidisciplinary Sciences	327	3%	0%	42
8	Evolutionary Biology	101	2%	0%	32
9	Plant Sciences	97	5%	0%	78
10	Biology	33	2%	0%	31

Address terms

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	CLIN GENET BIOINFORMAT	46864	0%	75%	3
2	AGRILIFE GENOM SERV	41658	0%	100%	2
3	KOREA ZOONOSIS KOZRI	41654	0%	50%	4
4	CHAIR BIOINFORMAT GRP	31240	0%	50%	3
5	ANIM PROD RD	27771	0%	67%	2
6	STATE FO T TREE GENET BREEDING	27771	0%	67%	2
7	SYST PHARMACOL BIOMARKERS	27771	0%	67%	2
8	PEST MANAGEMENT BIOCONTROL UNIT	26777	0%	43%	3
9	TRIDENT BIOTECH SCI	23799	0%	29%	4
10	A N BEKOZERSKY PHYS CHEM BIOL	20829	0%	100%	1

Journals

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass
1	BMC GENOMICS	65213	12%	2%	178
2	BIOINFORMATICS	39991	10%	1%	147
3	BMC BIOINFORMATICS	27539	7%	1%	102
4	GENOME BIOLOGY	18125	3%	2%	52
5	NATURE METHODS	8463	2%	2%	27
6	STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY	6692	1%	2%	13
7	BRIEFINGS IN BIOINFORMATICS	6170	1%	2%	15
8	JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY	5201	1%	3%	10
9	GENOME RESEARCH	4471	2%	1%	27
10	GIGASCIENCE	3628	0%	3%	6

Author Key Words

chi_square_rank	term	chi_square	shrOfCwithTerm	shrOfTermInClass	termInClass	LCSH search	Wikipedia search
1	RNA SEQ	674756	20%	11%	307	Search RNA+SEQ	Search RNA+SEQ
2	TRANSCRIPTOME ASSEMBLY	156628	1%	40%	19	Search TRANSCRIPTOME+ASSEMBLY	Search TRANSCRIPTOME+ASSEMBLY
3	DE NOVO ASSEMBLY	106335	2%	14%	37	Search DE+NOVO+ASSEMBLY	Search DE+NOVO+ASSEMBLY
4	TRANSCRIPTOME	93533	10%	3%	150	Search TRANSCRIPTOME	Search TRANSCRIPTOME
5	RNA SEQUENCING	85972	4%	7%	58	Search RNA+SEQUENCING	Search RNA+SEQUENCING
6	DIFFERENTIAL EXPRESSION ANALYSIS	76890	1%	31%	12	Search DIFFERENTIAL+EXPRESSION+ANALYSIS	Search DIFFERENTIAL+EXPRESSION+ANALYSIS
7	DESEQ2	66651	0%	80%	4	Search DESEQ2	Search DESEQ2
8	GENOME GUIDED TRANSCRIPTOME ASSEMBLY	62487	0%	100%	3	Search GENOME+GUIDED+TRANSCRIPTOME+ASSEMBLY	Search GENOME+GUIDED+TRANSCRIPTOME+ASSEMBLY
9	RNA SEQ DATA	48592	0%	33%	7	Search RNA+SEQ+DATA	Search RNA+SEQ+DATA
10	SPLICING GRAPH	46864	0%	75%	3	Search SPLICING+GRAPH	Search SPLICING+GRAPH

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1

rank	cluster_id2	link
1	17262	SINGLE CELL RNA SEQ//SINGLE CELL RNA SEQUENCING//SINGLE CELL TRANSCRIPTOMICS
2	2086	VARIANT CALLING//NEXT GENERATION SEQUENCING//BIOINFORMATICS
3	12440	GENOME ASSEMBLY//GENOME FINISHING//MINION
4	18663	TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA
5	33260	BIOCHEM MOL BIOPHYSZUCKERMAN MIND BRAIN B//BIOMED IBIMEDHLTH SCI PROGRAM//BREADTH OF EXPRESSION
6	12574	CHIP SEQ//CHROMATIN IMMUNOPRECIPITATION//PEAK CALLING
7	7045	EQTL//GENETICAL GENOMICS//ALLELE SPECIFIC EXPRESSION
8	996	SR PROTEINS//ALTERNATIVE SPLICING//SRPK1
9	18698	SERIAL ANALYSIS OF GENE EXPRESSION//SAGE//SERIAL ANALYSIS OF GENE EXPRESSION SAGE
10	1602	FALSE DISCOVERY RATE//MULTIPLE TESTING//MULTIPLE HYPOTHESIS TESTING

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Class information for: Level 1: RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY