Class information for:
Level 1: VARIANT CALLING//NEXT GENERATION SEQUENCING//BIOINFORMATICS

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
747 2             BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BMC BIOINFORMATICS 12946
2086 1                   VARIANT CALLING//NEXT GENERATION SEQUENCING//BIOINFORMATICS 2397

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 VARIANT CALLING authKW 315755 1% 69% 35
2 NEXT GENERATION SEQUENCING authKW 282512 14% 6% 332
3 BIOINFORMATICS journal 126712 14% 3% 329
4 SHORT READ ALIGNMENT authKW 80521 0% 88% 7
5 NGS authKW 69063 2% 10% 55
6 BINA TECHNOL address 65733 0% 100% 5
7 INDEL CALLING authKW 65733 0% 100% 5
8 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 59450 29% 1% 698
9 EXOME authKW 56437 1% 13% 34
10 VARIANT ANNOTATION authKW 53234 0% 45% 9

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 59450 29% 1% 698
2 Biotechnology & Applied Microbiology 26736 45% 0% 1071
3 Biochemical Research Methods 23682 33% 0% 796
4 Genetics & Heredity 19823 38% 0% 909
5 Pathology 941 6% 0% 147
6 Biochemistry & Molecular Biology 709 18% 0% 436
7 Medical Laboratory Technology 208 2% 0% 43
8 Oncology 95 6% 0% 133
9 Statistics & Probability 95 2% 0% 50
10 Multidisciplinary Sciences 78 1% 0% 30

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BINA TECHNOL 65733 0% 100% 5
2 SKARNES GRP 42068 0% 80% 4
3 USTAR GENET DISCOVERY 40254 0% 44% 7
4 MOL CHARACTERIZAT CLIN ASSAY DEV 29873 0% 45% 5
5 CARDIOVASC GENET GENE DIAGNOST 29578 0% 75% 3
6 BAYLOR HLTH 26293 0% 100% 2
7 EMBL OUTSTAT HINXTON 26293 0% 100% 2
8 GRYC I3M 26293 0% 100% 2
9 INB NODE 2 26293 0% 100% 2
10 JOINT PROGRAM HEREDITARY CANC 26293 0% 100% 2

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 126712 14% 3% 329
2 BMC BIOINFORMATICS 44394 7% 2% 163
3 JOURNAL OF MOLECULAR DIAGNOSTICS 36213 2% 5% 57
4 GENOME MEDICINE 25422 2% 5% 37
5 BMC GENOMICS 18571 5% 1% 120
6 GENOME RESEARCH 16935 3% 2% 66
7 NATURE METHODS 14189 2% 2% 44
8 GENOME BIOLOGY 13711 2% 2% 57
9 HUMAN MUTATION 9665 2% 1% 55
10 BRIEFINGS IN BIOINFORMATICS 9155 1% 3% 23

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 VARIANT CALLING 315755 1% 69% 35 Search VARIANT+CALLING Search VARIANT+CALLING
2 NEXT GENERATION SEQUENCING 282512 14% 6% 332 Search NEXT+GENERATION+SEQUENCING Search NEXT+GENERATION+SEQUENCING
3 SHORT READ ALIGNMENT 80521 0% 88% 7 Search SHORT+READ+ALIGNMENT Search SHORT+READ+ALIGNMENT
4 NGS 69063 2% 10% 55 Search NGS Search NGS
5 INDEL CALLING 65733 0% 100% 5 Search INDEL+CALLING Search INDEL+CALLING
6 EXOME 56437 1% 13% 34 Search EXOME Search EXOME
7 VARIANT ANNOTATION 53234 0% 45% 9 Search VARIANT+ANNOTATION Search VARIANT+ANNOTATION
8 STRUCTURAL VARIATION 52969 1% 16% 25 Search STRUCTURAL+VARIATION Search STRUCTURAL+VARIATION
9 CANCER GENOME ANALYSIS 52587 0% 100% 4 Search CANCER+GENOME+ANALYSIS Search CANCER+GENOME+ANALYSIS
10 SOMATIC MUTATION DETECTION 52587 0% 100% 4 Search SOMATIC+MUTATION+DETECTION Search SOMATIC+MUTATION+DETECTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 12440 GENOME ASSEMBLY//GENOME FINISHING//MINION
2 32458 DNA SEQUENCE COMPRESSION//REFERENCE BASED COMPRESSION//REFERENTIAL COMPRESSION
3 6435 RNA SEQ//TRANSCRIPTOME ASSEMBLY//DE NOVO ASSEMBLY
4 11137 INCIDENTAL FINDINGS//RETURN OF RESULTS//SECONDARY FINDINGS
5 21842 RESEARCH BIOPSY//PRECISION ONCOLOGY//PERSONALIZED CANC THER Y
6 5433 COPY NUMBER VARIATION//DNA COPY NUMBER//PENNCNV
7 10582 NSSNPS//POLYPHEN//LSDB
8 13044 CANCER GENOME//DRIVER GENE//PRECIS HLTH
9 35905 ANTIMICROBIAL ISTANCE MONITORING ARMOR P//ASSEMBLY BASED APPROACH//BACTERIAL WHOLE GENOME SEQUENCING
10 34166 CIRCOS//GENOMIC DATA VISUALIZATION//BHF GLASGOW CARIOVASC

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