Class information for:
Level 1: CODON USAGE//CODON USAGE BIAS//SYNONYMOUS CODON USAGE

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
226 3       GENETICS & HEREDITY//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 49202
341 2             MOLECULAR BIOLOGY AND EVOLUTION//EVOLUTIONARY BIOLOGY//GENETICS & HEREDITY 18153
4230 1                   CODON USAGE//CODON USAGE BIAS//SYNONYMOUS CODON USAGE 1856

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 CODON USAGE authKW 1403150 12% 36% 230
2 CODON USAGE BIAS authKW 1388605 7% 66% 124
3 SYNONYMOUS CODON USAGE authKW 847617 3% 81% 62
4 TRANSLATIONAL SELECTION authKW 774781 3% 89% 51
5 CODON BIAS authKW 564985 5% 37% 89
6 OPTIMAL CODONS authKW 408154 1% 96% 25
7 MUTATIONAL BIAS authKW 278507 2% 46% 36
8 EFFECTIVE NUMBER OF CODONS authKW 266494 1% 83% 19
9 CODON ADAPTATION INDEX authKW 257353 1% 63% 24
10 ORG EVOLUC GENOMA address 212529 1% 48% 26

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Genetics & Heredity 12995 35% 0% 650
2 Evolutionary Biology 9134 15% 0% 277
3 Biochemistry & Molecular Biology 6425 49% 0% 909
4 Mathematical & Computational Biology 4170 9% 0% 167
5 Biotechnology & Applied Microbiology 1504 13% 0% 246
6 Virology 1002 6% 0% 112
7 Biochemical Research Methods 699 7% 0% 136
8 Biology 647 6% 0% 110
9 Biophysics 430 7% 0% 121
10 Microbiology 214 6% 0% 110

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 ORG EVOLUC GENOMA 212529 1% 48% 26
2 STEM CELLS GENE DRUGS GANSU PROV 50938 0% 100% 3
3 GUANGZHOU EAST CAMPUS 33959 0% 100% 2
4 INSECT OURCE ENGN LIAONING PROV 33959 0% 100% 2
5 DISTRIBUTED INFORMAT 33269 0% 28% 7
6 EVOLUZ MOL 28053 0% 18% 9
7 CHEMINFORMAT BIOINFORMAT 25466 0% 50% 3
8 O GENET MEJORA ANIM 25466 0% 50% 3
9 SUBTROP SERICULTURE MULBERRY OURCES PROTECT 25466 0% 50% 3
10 SECC BIOQUIM 23692 1% 11% 13

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 JOURNAL OF MOLECULAR EVOLUTION 70194 7% 3% 126
2 MOLECULAR BIOLOGY AND EVOLUTION 15195 4% 1% 72
3 DNA RESEARCH 9057 1% 3% 19
4 NUCLEIC ACIDS RESEARCH 8405 8% 0% 143
5 GENE 5148 4% 0% 78
6 GENOME BIOLOGY AND EVOLUTION 3987 1% 1% 19
7 JOURNAL OF THEORETICAL BIOLOGY 3032 2% 0% 45
8 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 2935 1% 1% 24
9 EVOLUTIONARY BIOINFORMATICS 2455 0% 2% 7
10 GENETICS 2020 2% 0% 40

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 CODON USAGE 1403150 12% 36% 230 Search CODON+USAGE Search CODON+USAGE
2 CODON USAGE BIAS 1388605 7% 66% 124 Search CODON+USAGE+BIAS Search CODON+USAGE+BIAS
3 SYNONYMOUS CODON USAGE 847617 3% 81% 62 Search SYNONYMOUS+CODON+USAGE Search SYNONYMOUS+CODON+USAGE
4 TRANSLATIONAL SELECTION 774781 3% 89% 51 Search TRANSLATIONAL+SELECTION Search TRANSLATIONAL+SELECTION
5 CODON BIAS 564985 5% 37% 89 Search CODON+BIAS Search CODON+BIAS
6 OPTIMAL CODONS 408154 1% 96% 25 Search OPTIMAL+CODONS Search OPTIMAL+CODONS
7 MUTATIONAL BIAS 278507 2% 46% 36 Search MUTATIONAL+BIAS Search MUTATIONAL+BIAS
8 EFFECTIVE NUMBER OF CODONS 266494 1% 83% 19 Search EFFECTIVE+NUMBER+OF+CODONS Search EFFECTIVE+NUMBER+OF+CODONS
9 CODON ADAPTATION INDEX 257353 1% 63% 24 Search CODON+ADAPTATION+INDEX Search CODON+ADAPTATION+INDEX
10 MUTATION PRESSURE 195645 1% 52% 22 Search MUTATION+PRESSURE Search MUTATION+PRESSURE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 23442 CHARGAFFS SECOND PARITY RULE//SKEWS//STRAND ASYMMETRY
2 15030 ISOCHORES//EVOLUZ MOL//MALE MUTATION BIAS
3 26588 GENE COMPACTNESS//SELECTIVE CONSTRAINT//EVOLUTIONARY RATE
4 20001 TRIGGER FACTOR//NASCENT CHAIN//COTRANSLATIONAL FOLDING
5 13598 RIBOSOME PROFILING//UORF//SCANNING MODEL
6 10469 GENETIC CODE//CIRCULAR CODE//EQUIPE BIOINFORMAT THEOR
7 12001 FRAMESHIFT//RIBOSOMAL FRAMESHIFTING//RNA PSEUDOKNOT
8 10203 SHINE DALGARNO SEQUENCE//LEADERLESS MRNA//TRANSLATION INITIATION
9 27783 2 DIMENSIONAL DNA TYPING//FLUCTUATION RATCHET//GRP THEORET BIOL PHYS
10 16636 SUCCESS RUNS//DISTRIBUTIONS OF ORDER K//START UP DEMONSTRATION TEST

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