Class information for:
Level 1: RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
17 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//MICROBIOLOGY//JOURNAL OF BACTERIOLOGY 725599
213 3       TELOMERASE//TELOMERE//G QUADRUPLEX 51465
477 2             RIBOZYME//RIBOSWITCH//GROUP I INTRON 16038
3294 1                   RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT 2050

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 RNA SECONDARY STRUCTURE authKW 789270 8% 32% 162
2 RNA SECONDARY STRUCTURE PREDICTION authKW 423091 2% 81% 34
3 PSEUDOKNOT authKW 374263 3% 34% 71
4 RNA STRUCTURE PREDICTION authKW 239993 1% 71% 22
5 NONCODING RNA TECHNOL HLTH address 161971 2% 28% 38
6 INTERDISCIPLINARY BIOINFORMAT address 113542 3% 14% 53
7 RNA FOLDING authKW 103227 2% 13% 51
8 RNA STRUCTURE authKW 102266 4% 9% 73
9 GRP BIOINFORMAT COMPUTAT BIOL address 84537 1% 50% 11
10 BIOINFORMAT GRP address 77540 4% 6% 84

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Mathematical & Computational Biology 48973 29% 1% 586
2 Biochemical Research Methods 13816 28% 0% 566
3 Biotechnology & Applied Microbiology 5562 23% 0% 469
4 Biochemistry & Molecular Biology 4662 41% 0% 835
5 Computer Science, Interdisciplinary Applications 2382 10% 0% 200
6 Statistics & Probability 783 5% 0% 108
7 Biology 617 6% 0% 114
8 Computer Science, Theory & Methods 486 5% 0% 100
9 Biophysics 165 4% 0% 89
10 Mathematics, Interdisciplinary Applications 124 2% 0% 46

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 NONCODING RNA TECHNOL HLTH 161971 2% 28% 38
2 INTERDISCIPLINARY BIOINFORMAT 113542 3% 14% 53
3 GRP BIOINFORMAT COMPUTAT BIOL 84537 1% 50% 11
4 BIOINFORMAT GRP 77540 4% 6% 84
5 IBHV 47056 1% 22% 14
6 AMIB TEAM PROJECT 46117 0% 100% 3
7 ELE OMECH AUTOMAT 35133 0% 57% 4
8 IMAGE PROC SECT 35133 0% 57% 4
9 BIOINFORMAT COMPUTAT BIOL GRP 32020 0% 42% 5
10 INRIA AMIB BIOINFORMAT 30745 0% 100% 2

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 BIOINFORMATICS 54637 10% 2% 200
2 JOURNAL OF COMPUTATIONAL BIOLOGY 45157 3% 4% 69
3 RNA 44020 5% 3% 93
4 NUCLEIC ACIDS RESEARCH 37541 15% 1% 315
5 ALGORITHMS FOR MOLECULAR BIOLOGY 36693 1% 9% 27
6 COMPUTER APPLICATIONS IN THE BIOSCIENCES 28349 2% 5% 41
7 BMC BIOINFORMATICS 21901 5% 1% 106
8 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 15342 2% 3% 35
9 JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 7524 1% 4% 14
10 RNA-A PUBLICATION OF THE RNA SOCIETY 4897 1% 2% 17

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 RNA SECONDARY STRUCTURE 789270 8% 32% 162 Search RNA+SECONDARY+STRUCTURE Search RNA+SECONDARY+STRUCTURE
2 RNA SECONDARY STRUCTURE PREDICTION 423091 2% 81% 34 Search RNA+SECONDARY+STRUCTURE+PREDICTION Search RNA+SECONDARY+STRUCTURE+PREDICTION
3 PSEUDOKNOT 374263 3% 34% 71 Search PSEUDOKNOT Search PSEUDOKNOT
4 RNA STRUCTURE PREDICTION 239993 1% 71% 22 Search RNA+STRUCTURE+PREDICTION Search RNA+STRUCTURE+PREDICTION
5 RNA FOLDING 103227 2% 13% 51 Search RNA+FOLDING Search RNA+FOLDING
6 RNA STRUCTURE 102266 4% 9% 73 Search RNA+STRUCTURE Search RNA+STRUCTURE
7 K NONCROSSING RNA STRUCTURE 76861 0% 100% 5 Search K+NONCROSSING+RNA+STRUCTURE Search K+NONCROSSING+RNA+STRUCTURE
8 MINIMUM FREE ENERGY 76317 1% 41% 12 Search MINIMUM+FREE+ENERGY Search MINIMUM+FREE+ENERGY
9 RNA MOTIF 75657 1% 31% 16 Search RNA+MOTIF Search RNA+MOTIF
10 RNA DESIGN 75320 0% 70% 7 Search RNA+DESIGN Search RNA+DESIGN

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 14177 BIOL MACROMOL STRUCT//NEAREST NEIGHBOR PROPERTIES//BULGE LOOPS
2 11674 RIBOSWITCH//RNA SWITCH//APTAZYME
3 25405 ELEMENTARY LANDSCAPES//FITNESS LANDSCAPES//GENOTYPE PHENOTYPE MAP
4 3842 GROUP I INTRON//SELF SPLICING//RIBOZYME
5 22001 Q BETA REPLICASE//POLONIES//RNA PHAGE
6 21063 TREE EDIT DISTANCE//TREE MINING//UNORDERED TREES
7 12001 FRAMESHIFT//RIBOSOMAL FRAMESHIFTING//RNA PSEUDOKNOT
8 17375 INTERACTION PROPENSITY//DNA BINDING RESIDUES//RNA BINDING RESIDUES
9 6821 HFQ//SRNA//RNA BIOL GRP
10 1990 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES

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